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Lj5g3v2218230.1

Overview

Field Value
Gene ID Lj5g3v2218230
Transcript ID Lj5g3v2218230.1
Lotus japonicus genome version MG20 v3.0
Description P-loop containing nucleoside triphosphate hydrolases superfamily protein [Theobroma cacao] gi|508726930|gb|EOY18827.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR20953:SF2
1 469 469 0 –
PANTHER
PTHR20953
1 469 469 0 –
SUPERFAMILY
SSF52540
22 257 236 6.64E-18
IPR027417
Gene3D
G3DSA:3.40.50.300
89 122 34 1.40E-04
IPR027417
CDD
cd00009
106 238 133 3.52E-10 –
Pfam
PF13401
114 161 48 2.00E-06
IPR003593
SMART
SM00382
114 245 132 2.00E-13
IPR003593
Gene3D
G3DSA:3.40.50.300
123 137 15 1.10E-06
IPR027417
Gene3D
G3DSA:3.40.50.300
138 203 66 2.50E-08
IPR027417
Gene3D
G3DSA:3.40.50.300
204 259 56 1.10E-06
IPR027417
MobiDBLite
mobidb-lite
346 370 25 – –
CDD
cd02645
493 552 60 3.74E-20
IPR034081
MobiDBLite
mobidb-lite
552 592 41 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj5g3v2218230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2218230.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.