Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PF13401

Source: Pfam

Description

AAA domain

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 9

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0273649.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: cell division control protein 6 homolog [Cicer arietinum] gi\|502129264\|ref\|XP_004500243.1\|	Domains G3DSA:1.10.10.10 G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR003593 IPR011991 IPR015163 IPR016314 IPR027417 PF09079 PF13401 PIRSF001767 PTHR10763 SM01074 SSF46785 SSF52540 SignalP-TM_GRAM_POSITIVE cd00009 cd08768 mobidb-lite	19
Lj5g3v1575200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RNA helicase family protein isoform 8 [Theobroma cacao] gi\|508703443\|gb\|EOX95339.1\|	Domains G3DSA:3.40.50.300 IPR001650 IPR003593 IPR007502 IPR014001 IPR027417 PF00271 PF04408 PF13401 PS51192 PS51194 PTHR18934 SM00382 SM00487 SM00490 SM00847 SSF52540 cd00046 cd00079	19
Lj5g3v1575200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase-like protein [Medicago truncatula] gi\|357442187\|ref\|XP_003591371.1\|	Domains G3DSA:3.40.50.300 IPR001650 IPR003593 IPR007502 IPR011709 IPR014001 IPR027417 PF00271 PF04408 PF07717 PF13401 PS51192 PS51194 PTHR18934 SM00382 SM00487 SM00490 SM00847 SSF52540 cd00046 cd00079	21
Lj5g3v2218230.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Theobroma cacao] gi\|508726930\|gb\|EOY18827.1\|	Domains G3DSA:3.40.50.300 IPR003593 IPR027417 IPR034081 PF13401 PTHR20953 PTHR20953:SF2 SM00382 SSF52540 cd00009 cd02645 mobidb-lite	12
LotjaGi5g1v0242600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT3G62310.1 RNA helicase family protein; Swiss-Prot: sp\|Q9LZQ9\|DEAH2_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2; TrEMBL-Plants: tr\|G7ICV1\|G7ICV1_MEDTR Pre-mRNA splicing factor ATP-dependent RNA helicase; Found in the gene: LotjaGi5g1v0242600	Domains G3DSA:1.20.120.1080 G3DSA:3.40.50.300 IPR001650 IPR003593 IPR007502 IPR011709 IPR014001 IPR027417 PF00271 PF04408 PF07717 PF13401 PS51192 PS51194 PTHR18934 PTHR18934:SF217 SM00382 SM00487 SM00490 SM00847 SSF52540 cd17973 cd18791	23
LotjaGi5g1v0242600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT3G62310.2 RNA helicase family protein; Swiss-Prot: sp\|Q9LZQ9\|DEAH2_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2; TrEMBL-Plants: tr\|A0A0B0N1D1\|A0A0B0N1D1_GOSAR Uncharacterized protein; Found in the gene: LotjaGi5g1v0242600	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.120.1080 G3DSA:3.40.50.300 IPR001650 IPR003593 IPR007502 IPR014001 IPR027417 NON_CYTOPLASMIC_DOMAIN PF00271 PF04408 PF13401 PS51192 PS51194 PTHR18934 PTHR18934:SF217 SM00382 SM00487 SM00490 SM00847 SSF52540 TMhelix TRANSMEMBRANE cd17973 cd18791	25
LotjaGi5g1v0242600.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT3G62310.1 RNA helicase family protein; Swiss-Prot: sp\|Q9LZQ9\|DEAH2_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2; TrEMBL-Plants: tr\|I1JQU1\|I1JQU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0242600	Domains G3DSA:1.20.120.1080 G3DSA:3.40.50.300 IPR001650 IPR003593 IPR007502 IPR014001 IPR027417 PF00271 PF04408 PF13401 PS51192 PS51194 PTHR18934 PTHR18934:SF217 SM00382 SM00487 SM00490 SM00847 SSF52540 cd17973 cd18791	21
LotjaGi6g1v0112500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cell division control 6; TAIR: AT1G07270.1 Cell division control, Cdc6; Swiss-Prot: sp\|Q8W032\|CDC6B_ARATH Cell division control protein 6 homolog B; TrEMBL-Plants: tr\|I1KYU8\|I1KYU8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0112500	Domains G3DSA:1.10.10.10 G3DSA:3.40.50.300 IPR003593 IPR015163 IPR016314 IPR027417 IPR036388 IPR036390 IPR041083 PF09079 PF13401 PF17872 PIRSF001767 PTHR10763 PTHR10763:SF26 SM01074 SSF46785 SSF52540 SignalP-TM cd00009 cd08768 mobidb-lite	22
LotjaGi6g1v0112500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cell division control 6; TAIR: AT1G07270.1 Cell division control, Cdc6; Swiss-Prot: sp\|Q8W032\|CDC6B_ARATH Cell division control protein 6 homolog B; TrEMBL-Plants: tr\|I1KYU8\|I1KYU8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0112500	Domains G3DSA:1.10.10.10 G3DSA:3.40.50.300 IPR003593 IPR015163 IPR016314 IPR027417 IPR036388 IPR036390 IPR041083 PF09079 PF13401 PF17872 PIRSF001767 PTHR10763 PTHR10763:SF26 SM01074 SSF46785 SSF52540 SignalP-TM cd00009 cd08768 mobidb-lite	22

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	11.11