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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2241040 |
| Transcript ID | Lj5g3v2241040.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g35130-like [Glycine max] gi|356575482|ref|XP_003555869.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 482 | 474 | 9.50E-304 | – | |
| PANTHER | 9 | 482 | 474 | 9.50E-304 | – | |
| Gene3D | 37 | 182 | 146 | 7.70E-07 | ||
| SUPERFAMILY | 61 | 268 | 208 | 3.66E-06 | – | |
| Pfam | 62 | 109 | 48 | 2.20E-08 | ||
| ProSiteProfiles | 62 | 96 | 35 | 9.087 | ||
| TIGRFAM | 64 | 98 | 35 | 7.70E-04 | ||
| ProSiteProfiles | 97 | 131 | 35 | 11.488 | ||
| TIGRFAM | 100 | 129 | 30 | 3.00E-06 | ||
| ProSiteProfiles | 132 | 166 | 35 | 12.123 | ||
| Pfam | 133 | 176 | 44 | 1.30E-12 | ||
| TIGRFAM | 134 | 167 | 34 | 2.40E-09 | ||
| ProSiteProfiles | 167 | 201 | 35 | 11.235 | ||
| TIGRFAM | 170 | 203 | 34 | 4.00E-09 | ||
| Gene3D | 183 | 366 | 184 | 6.10E-06 | ||
| Pfam | 201 | 249 | 49 | 2.00E-14 | ||
| ProSiteProfiles | 202 | 236 | 35 | 13.263 | ||
| TIGRFAM | 204 | 238 | 35 | 3.20E-10 | ||
| ProSiteProfiles | 237 | 271 | 35 | 12.156 | ||
| TIGRFAM | 239 | 272 | 34 | 1.10E-07 | ||
| Pfam | 267 | 300 | 34 | 2.30E-10 | ||
| ProSiteProfiles | 272 | 306 | 35 | 13.11 | ||
| TIGRFAM | 275 | 307 | 33 | 1.10E-08 | ||
| ProSiteProfiles | 307 | 341 | 35 | 8.769 | ||
| TIGRFAM | 313 | 343 | 31 | 1.20E-05 | ||
| Pfam | 313 | 339 | 27 | 0.0014 | ||
| ProSiteProfiles | 342 | 376 | 35 | 8.879 | ||
| TIGRFAM | 345 | 377 | 33 | 9.10E-04 | ||
| Pfam | 346 | 371 | 26 | 0.047 | ||
| ProSiteProfiles | 377 | 411 | 35 | 11.641 | ||
| Pfam | 379 | 409 | 31 | 1.60E-05 | ||
| TIGRFAM | 380 | 413 | 34 | 1.60E-08 | ||
| Pfam | 411 | 458 | 48 | 3.30E-08 | ||
| ProSiteProfiles | 412 | 446 | 35 | 11.17 | ||
| TIGRFAM | 414 | 447 | 34 | 3.60E-07 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v2241040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2241040.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.