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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2242470 |
| Transcript ID | Lj5g3v2242470.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Glycine max] gi|356495419|ref|XP_003516575.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 302 | 302 | 7.30E-216 | – | |
| PANTHER | 1 | 302 | 302 | 7.30E-216 | – | |
| ProSiteProfiles | 22 | 56 | 35 | 9.482 | ||
| Pfam | 25 | 68 | 44 | 1.50E-09 | ||
| TIGRFAM | 26 | 57 | 32 | 2.30E-05 | ||
| Gene3D | 40 | 65 | 26 | 2.00E-04 | ||
| ProSiteProfiles | 57 | 91 | 35 | 7.892 | ||
| SUPERFAMILY | 68 | 158 | 91 | 5.06E-05 | ||
| Gene3D | 100 | 164 | 65 | 2.00E-04 | ||
| Pfam | 124 | 172 | 49 | 1.10E-14 | ||
| ProSiteProfiles | 125 | 159 | 35 | 12.375 | ||
| TIGRFAM | 128 | 160 | 33 | 1.10E-08 | ||
| ProSiteProfiles | 160 | 194 | 35 | 10.698 | ||
| TIGRFAM | 162 | 194 | 33 | 7.80E-05 | ||
| SUPERFAMILY | 194 | 290 | 97 | 5.06E-05 | ||
| ProSiteProfiles | 195 | 225 | 31 | 7.092 | ||
| Pfam | 198 | 222 | 25 | 0.009 | ||
| TIGRFAM | 199 | 222 | 24 | 0.0026 | ||
| Gene3D | 199 | 284 | 86 | 2.00E-04 | ||
| ProSiteProfiles | 261 | 295 | 35 | 6.697 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v2242470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2242470.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.