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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2258330 |
| Transcript ID | Lj5g3v2258330.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: mechanosensitive ion channel protein 6-like isoform X1 [Cicer arietinum] gi|502121167|ref|XP_004497211.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | – | – | |
| Phobius | 1 | 309 | 309 | – | – | |
| PIRSF | 34 | 930 | 897 | 5.30E-263 | ||
| PANTHER | 66 | 930 | 865 | 0 | – | |
| PANTHER | 66 | 930 | 865 | 0 | – | |
| MobiDBLite | 88 | 111 | 24 | – | – | |
| MobiDBLite | 173 | 225 | 53 | – | – | |
| MobiDBLite | 238 | 294 | 57 | – | – | |
| Phobius | 310 | 332 | 23 | – | – | |
| TMHMM | 313 | 335 | 23 | – | – | |
| Phobius | 333 | 351 | 19 | – | – | |
| TMHMM | 350 | 372 | 23 | – | – | |
| Phobius | 352 | 373 | 22 | – | – | |
| Phobius | 374 | 393 | 20 | – | – | |
| TMHMM | 393 | 411 | 19 | – | – | |
| Phobius | 394 | 411 | 18 | – | – | |
| Phobius | 412 | 422 | 11 | – | – | |
| Phobius | 423 | 443 | 21 | – | – | |
| TMHMM | 431 | 453 | 23 | – | – | |
| Phobius | 444 | 697 | 254 | – | – | |
| Coils | 482 | 505 | 24 | – | – | |
| MobiDBLite | 534 | 553 | 20 | – | – | |
| TMHMM | 697 | 719 | 23 | – | – | |
| Pfam | 697 | 901 | 205 | 1.60E-22 | ||
| Phobius | 698 | 717 | 20 | – | – | |
| Phobius | 718 | 728 | 11 | – | – | |
| TMHMM | 729 | 751 | 23 | – | – | |
| Phobius | 729 | 752 | 24 | – | – | |
| SUPERFAMILY | 745 | 804 | 60 | 4.25E-12 | ||
| Phobius | 753 | 930 | 178 | – | – | |
| Gene3D | 755 | 804 | 50 | 2.10E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj5g3v2258330.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2258330.1, powered by CORGI.
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