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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2258480 |
| Transcript ID | Lj5g3v2258480.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g08305-like [Glycine max] gi|356574121|ref|XP_003555200.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 41 | 490 | 450 | 0 | – | |
| PANTHER | 41 | 490 | 450 | 0 | – | |
| SUPERFAMILY | 65 | 247 | 183 | 4.17E-05 | ||
| ProSiteProfiles | 78 | 112 | 35 | 10.304 | ||
| TIGRFAM | 81 | 113 | 33 | 3.40E-05 | ||
| Pfam | 81 | 110 | 30 | 9.30E-05 | ||
| ProSiteProfiles | 148 | 178 | 31 | 7.213 | ||
| Pfam | 153 | 179 | 27 | 0.035 | ||
| Gene3D | 176 | 359 | 184 | 8.10E-08 | ||
| ProSiteProfiles | 179 | 209 | 31 | 10.567 | ||
| TIGRFAM | 181 | 211 | 31 | 2.30E-07 | ||
| ProSiteProfiles | 210 | 244 | 35 | 12.025 | ||
| Pfam | 210 | 257 | 48 | 2.50E-08 | ||
| SUPERFAMILY | 211 | 474 | 264 | 5.70E-08 | ||
| TIGRFAM | 213 | 241 | 29 | 1.20E-07 | ||
| ProSiteProfiles | 245 | 279 | 35 | 7.487 | ||
| ProSiteProfiles | 280 | 310 | 31 | 6.807 | ||
| Pfam | 285 | 305 | 21 | 0.21 | ||
| ProSiteProfiles | 313 | 347 | 35 | 10.885 | ||
| Pfam | 313 | 360 | 48 | 1.90E-10 | ||
| TIGRFAM | 316 | 349 | 34 | 3.30E-06 | ||
| ProSiteProfiles | 348 | 382 | 35 | 10.687 | ||
| TIGRFAM | 350 | 383 | 34 | 1.90E-04 | ||
| ProSiteProfiles | 383 | 413 | 31 | 6.873 | ||
| Gene3D | 426 | 470 | 45 | 8.10E-08 | ||
| ProSiteProfiles | 449 | 483 | 35 | 6.555 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v2258480.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2258480.1, powered by CORGI.
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