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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2298210 |
| Transcript ID | Lj5g3v2298210.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Glycine max] gi|356495419|ref|XP_003516575.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 316 | 316 | 0 | – | |
| PANTHER | 1 | 316 | 316 | 0 | – | |
| ProSiteProfiles | 11 | 45 | 35 | 5.196 | ||
| ProSiteProfiles | 78 | 112 | 35 | 11.575 | ||
| Pfam | 79 | 125 | 47 | 1.40E-10 | ||
| TIGRFAM | 80 | 111 | 32 | 2.10E-07 | ||
| SUPERFAMILY | 82 | 207 | 126 | 1.14E-05 | ||
| ProSiteProfiles | 114 | 148 | 35 | 6.369 | ||
| ProSiteProfiles | 149 | 179 | 31 | 7.739 | ||
| Gene3D | 160 | 213 | 54 | 1.60E-08 | ||
| Pfam | 180 | 226 | 47 | 1.10E-12 | ||
| ProSiteProfiles | 180 | 214 | 35 | 13.724 | ||
| TIGRFAM | 182 | 216 | 35 | 2.70E-12 | ||
| ProSiteProfiles | 215 | 249 | 35 | 5.272 | ||
| ProSiteProfiles | 250 | 280 | 31 | 8.517 | ||
| Pfam | 255 | 279 | 25 | 0.0016 | ||
| SUPERFAMILY | 257 | 291 | 35 | 1.14E-05 | ||
| Pfam | 281 | 327 | 47 | 5.30E-08 | ||
| ProSiteProfiles | 281 | 315 | 35 | 10.852 | ||
| TIGRFAM | 283 | 316 | 34 | 1.20E-05 | ||
| ProSiteProfiles | 316 | 350 | 35 | 5.305 | ||
| PANTHER | 352 | 663 | 312 | 0 | – | |
| PANTHER | 352 | 663 | 312 | 0 | – | |
| Gene3D | 380 | 441 | 62 | 1.60E-08 | ||
| ProSiteProfiles | 382 | 416 | 35 | 10.161 | ||
| Pfam | 385 | 428 | 44 | 1.40E-10 | ||
| TIGRFAM | 386 | 417 | 32 | 4.80E-06 | ||
| SUPERFAMILY | 390 | 446 | 57 | 1.14E-05 | ||
| ProSiteProfiles | 417 | 451 | 35 | 8.002 | ||
| Pfam | 484 | 532 | 49 | 2.20E-13 | ||
| ProSiteProfiles | 485 | 519 | 35 | 12.156 | ||
| Gene3D | 488 | 583 | 96 | 1.60E-08 | ||
| TIGRFAM | 488 | 520 | 33 | 1.00E-07 | ||
| ProSiteProfiles | 520 | 550 | 31 | 9.229 | ||
| TIGRFAM | 522 | 550 | 29 | 2.30E-04 | ||
| ProSiteProfiles | 556 | 586 | 31 | 6.533 | ||
| Pfam | 559 | 583 | 25 | 0.14 | ||
| SUPERFAMILY | 585 | 647 | 63 | 1.14E-05 | ||
| Gene3D | 616 | 643 | 28 | 1.60E-08 | ||
| ProSiteProfiles | 622 | 656 | 35 | 6.445 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v2298210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2298210.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.