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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0003500 |
| Transcript ID | Lj6g3v0003500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pho1-like protein [Medicago truncatula] gi|357452341|ref|XP_003596447.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 377 | 377 | – | – | |
| Pfam | 2 | 38 | 37 | 5.10E-13 | ||
| ProSiteProfiles | 2 | 327 | 326 | 32.175 | ||
| PANTHER | 2 | 56 | 55 | 0 | – | |
| PANTHER | 2 | 56 | 55 | 0 | – | |
| CDD | 3 | 322 | 320 | 8.12E-35 | – | |
| Pfam | 76 | 329 | 254 | 1.30E-52 | ||
| PANTHER | 79 | 167 | 89 | 0 | – | |
| PANTHER | 79 | 167 | 89 | 0 | – | |
| MobiDBLite | 156 | 196 | 41 | – | – | |
| PANTHER | 269 | 775 | 507 | 0 | – | |
| PANTHER | 269 | 775 | 507 | 0 | – | |
| TMHMM | 378 | 400 | 23 | – | – | |
| Phobius | 378 | 402 | 25 | – | – | |
| Phobius | 403 | 421 | 19 | – | – | |
| Pfam | 419 | 752 | 334 | 7.80E-83 | ||
| TMHMM | 420 | 442 | 23 | – | – | |
| Phobius | 422 | 442 | 21 | – | – | |
| Phobius | 443 | 465 | 23 | – | – | |
| TMHMM | 466 | 488 | 23 | – | – | |
| Phobius | 466 | 487 | 22 | – | – | |
| Phobius | 488 | 498 | 11 | – | – | |
| TMHMM | 498 | 520 | 23 | – | – | |
| Phobius | 499 | 520 | 22 | – | – | |
| Phobius | 521 | 646 | 126 | – | – | |
| ProSiteProfiles | 584 | 775 | 192 | 24.397 | ||
| Phobius | 647 | 666 | 20 | – | – | |
| TMHMM | 647 | 666 | 20 | – | – | |
| Phobius | 667 | 694 | 28 | – | – | |
| Phobius | 695 | 715 | 21 | – | – | |
| TMHMM | 695 | 717 | 23 | – | – | |
| Phobius | 716 | 775 | 60 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj6g3v0003500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0003500.1, powered by CORGI.
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