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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0143880 |
| Transcript ID | Lj6g3v0143880.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic-like [Cicer arietinum] gi|502170587|ref|XP_004514863.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 18 | 18 | 5.503 | ||
| PANTHER | 1 | 144 | 144 | 7.00E-254 | – | |
| PANTHER | 1 | 144 | 144 | 7.00E-254 | – | |
| ProSiteProfiles | 19 | 53 | 35 | 8.912 | ||
| TIGRFAM | 22 | 55 | 34 | 0.001 | ||
| Pfam | 22 | 51 | 30 | 0.0082 | ||
| Pfam | 53 | 101 | 49 | 2.60E-11 | ||
| ProSiteProfiles | 54 | 88 | 35 | 9.635 | ||
| TIGRFAM | 56 | 89 | 34 | 3.40E-04 | ||
| Gene3D | 87 | 176 | 90 | 5.00E-11 | ||
| ProSiteProfiles | 89 | 123 | 35 | 11.181 | ||
| TIGRFAM | 92 | 125 | 34 | 2.20E-06 | ||
| Pfam | 111 | 164 | 54 | 4.40E-09 | ||
| ProSiteProfiles | 124 | 158 | 35 | 11.389 | ||
| TIGRFAM | 126 | 159 | 34 | 5.70E-06 | ||
| ProSiteProfiles | 159 | 193 | 35 | 11.016 | ||
| TIGRFAM | 162 | 194 | 33 | 2.10E-06 | ||
| Pfam | 166 | 191 | 26 | 0.0012 | ||
| PANTHER | 193 | 445 | 253 | 7.00E-254 | – | |
| PANTHER | 193 | 445 | 253 | 7.00E-254 | – | |
| Pfam | 193 | 241 | 49 | 1.00E-13 | ||
| ProSiteProfiles | 194 | 228 | 35 | 10.797 | ||
| TIGRFAM | 196 | 230 | 35 | 1.00E-05 | ||
| ProSiteProfiles | 229 | 263 | 35 | 10.589 | ||
| TIGRFAM | 231 | 265 | 35 | 4.50E-06 | ||
| Gene3D | 232 | 396 | 165 | 5.00E-11 | ||
| ProSiteProfiles | 264 | 298 | 35 | 10.556 | ||
| Pfam | 266 | 294 | 29 | 0.017 | ||
| TIGRFAM | 266 | 299 | 34 | 5.10E-05 | ||
| Pfam | 299 | 347 | 49 | 3.80E-15 | ||
| ProSiteProfiles | 299 | 333 | 35 | 11.915 | ||
| TIGRFAM | 302 | 335 | 34 | 1.00E-06 | ||
| ProSiteProfiles | 334 | 368 | 35 | 13.45 | ||
| TIGRFAM | 336 | 369 | 34 | 6.60E-10 | ||
| Pfam | 357 | 412 | 56 | 7.60E-10 | ||
| ProSiteProfiles | 369 | 403 | 35 | 12.419 | ||
| TIGRFAM | 372 | 404 | 33 | 4.90E-09 | ||
| MobiDBLite | 508 | 528 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v0143880.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0143880.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.