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Lj6g3v0367980.1

Overview

Field Value
Gene ID Lj6g3v0367980
Transcript ID Lj6g3v0367980.1
Lotus japonicus genome version MG20 v3.0
Description GDP-L-fucose synthase [Medicago truncatula] gi|357511215|ref|XP_003625896.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF51735
19 323 305 1.09E-78
IPR016040
Hamap
MF_00956
20 322 303 50.841
IPR028614
PANTHER
PTHR10366:SF246
22 324 303 1.20E-222 –
PANTHER
PTHR10366
22 324 303 1.20E-222 –
Gene3D
G3DSA:3.40.50.720
22 225 204 1.10E-71
IPR016040
CDD
cd05239
22 320 299 0
IPR028614
Pfam
PF01370
23 254 232 4.70E-76
IPR001509
Gene3D
G3DSA:3.90.25.10
226 248 23 2.80E-12 –
Gene3D
G3DSA:3.90.25.10
301 323 23 2.80E-12 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0009226
Biological process Nucleotide-sugar biosynthetic process The chemical reactions and pathways resulting in the formation of nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0050662
Molecular function Coenzyme binding Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj6g3v0367980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0367980.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.