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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0497300 |
| Transcript ID | Lj6g3v0497300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: clathrin heavy chain 1-like [Glycine max] gi|356539985|ref|XP_003538472.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 1069 | 1069 | 0 | ||
| Pfam | 1 | 73 | 73 | 9.70E-09 | ||
| ProSiteProfiles | 1 | 80 | 80 | 19.825 | ||
| PANTHER | 1 | 1079 | 1079 | 0 | – | |
| PANTHER | 1 | 1079 | 1079 | 0 | – | |
| SUPERFAMILY | 2 | 176 | 175 | 3.74E-47 | ||
| SMART | 83 | 225 | 143 | 3.70E-39 | ||
| ProSiteProfiles | 83 | 225 | 143 | 31.976 | ||
| Pfam | 84 | 223 | 140 | 1.50E-20 | ||
| Gene3D | 100 | 322 | 223 | 2.50E-41 | ||
| SMART | 230 | 369 | 140 | 2.80E-41 | ||
| ProSiteProfiles | 230 | 369 | 140 | 36.747 | ||
| Pfam | 233 | 366 | 134 | 4.60E-28 | ||
| SUPERFAMILY | 284 | 442 | 159 | 2.13E-34 | ||
| ProSiteProfiles | 376 | 521 | 146 | 41.969 | ||
| SMART | 376 | 521 | 146 | 1.50E-41 | ||
| Pfam | 376 | 514 | 139 | 1.20E-30 | ||
| SUPERFAMILY | 433 | 578 | 146 | 8.06E-28 | ||
| ProSiteProfiles | 525 | 666 | 142 | 34.39 | ||
| SMART | 525 | 666 | 142 | 2.40E-37 | ||
| Pfam | 530 | 664 | 135 | 1.70E-27 | ||
| SUPERFAMILY | 579 | 914 | 336 | 1.09E-107 | ||
| Gene3D | 580 | 918 | 339 | 7.10E-150 | ||
| ProSiteProfiles | 671 | 817 | 147 | 41.402 | ||
| SMART | 671 | 817 | 147 | 4.60E-43 | ||
| Pfam | 672 | 815 | 144 | 1.40E-28 | ||
| SMART | 820 | 979 | 160 | 1.20E-42 | ||
| ProSiteProfiles | 820 | 963 | 144 | 39.185 | ||
| Pfam | 822 | 962 | 141 | 4.10E-30 | ||
| Coils | 860 | 880 | 21 | – | – | |
| Gene3D | 919 | 1040 | 122 | 5.70E-28 | ||
| Coils | 1000 | 1035 | 36 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Molecular function | Clathrin light chain binding | Interacting selectively and non-covalently with a clathrin light chain. | ||
| Cellular component | Clathrin complex | A protein complex that consists of three clathrin heavy chains and three clathrin light chains, organized into a symmetrical three-legged structure called a triskelion. In clathrin-coated vesicles clathrin is the main component of the coat and forms a polymeric mechanical scaffold on the vesicle surface. |
Expression pattern of Lj6g3v0497300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0497300.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.