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Lj6g3v0550640.3

Overview

Field Value
Gene ID Lj6g3v0550640
Transcript ID Lj6g3v0550640.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like [Glycine max] gi|356538146|ref|XP_003537565.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22808:SF1
8 377 370 0 –
PANTHER
PTHR22808
8 377 370 0 –
SUPERFAMILY
SSF53335
25 343 319 2.83E-51
IPR029063
ProSiteProfiles
PS51686
39 452 414 45.831
IPR001678
PRINTS
PR02011
100 121 22 2.00E-13
IPR023270
Gene3D
G3DSA:3.40.50.150
136 338 203 2.10E-62
IPR029063
Pfam
PF01189
143 328 186 2.30E-31
IPR001678
PRINTS
PR02008
154 164 11 2.10E-20
IPR023267
ProSitePatterns
PS01153
243 254 12 –
IPR018314
PRINTS
PR02008
244 256 13 2.10E-20
IPR023267
PRINTS
PR02008
294 310 17 2.10E-20
IPR023267
PRINTS
PR02011
328 347 20 2.00E-13
IPR023270
PANTHER
PTHR22808
421 490 70 0 –
PANTHER
PTHR22808:SF1
421 490 70 0 –
SUPERFAMILY
SSF53335
424 452 29 2.83E-51
IPR029063
Gene3D
G3DSA:3.40.50.150
426 451 26 2.10E-62
IPR029063
PRINTS
PR02008
434 451 18 2.10E-20
IPR023267
MobiDBLite
mobidb-lite
460 510 51 – –
PANTHER
PTHR22808
513 751 239 0 –
PANTHER
PTHR22808:SF1
513 751 239 0 –
PRINTS
PR02011
619 631 13 2.00E-13
IPR023270

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0016428
Molecular function TRNA (cytosine-5-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing 5-methylcytosine.
Subterm of

Genome browser

LORE1 insertions 36

Expression data

Expression pattern

Expression pattern of Lj6g3v0550640.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0550640.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.