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NOL1/NOP2/sun family signature.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Ribosomal RNA small subunit methyltransferase B [Medicago truncatula] gi|357494215|ref|XP_003617396.1| | 13 | ||
| – | Ribosomal RNA small subunit methyltransferase B [Medicago truncatula] gi|357494215|ref|XP_003617396.1| | 20 | ||
| – | TRNA (cytosine-5-)-methyltransferase NSUN2 [Medicago truncatula] gi|357463293|ref|XP_003601928.1| | 14 | ||
| – | PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like [Glycine max] gi|356538146|ref|XP_003537565.1| | 15 | ||
| – | S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|22328952|ref|NP_194390.2| | 18 | ||
| – | AT5G55920 [Arabidopsis thaliana] gi|222423014|dbj|BAH19490.1| | 15 | ||
| – | Ribosomal RNA small subunit methyltransferase B; TAIR: AT1G06560.1 NOL1/NOP2/sun family protein; Swiss-Prot: sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6; TrEMBL-Plants: tr|K7M4N7|K7M4N7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0043900 | 18 | ||
| – | Ribosomal RNA small subunit methyltransferase F; TAIR: AT2G22400.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase; TrEMBL-Plants: tr|A0A0B2PBC2|A0A0B2PBC2_GLYSO tRNA (Cytosine(34)-C(5))-methyltransferase; Found in the gene: LotjaGi4g1v0395400 | 14 | ||
| – | Ribosomal RNA small subunit methyltransferase F; TAIR: AT2G22400.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase; TrEMBL-Plants: tr|A0A0B2SJ66|A0A0B2SJ66_GLYSO tRNA (Cytosine(34)-C(5))-methyltransferase; Found in the gene: LotjaGi6g1v0092300 | 14 | ||
| – | Ribosomal RNA small subunit methyltransferase F; TAIR: AT2G22400.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase; TrEMBL-Plants: tr|A0A1J7IQK7|A0A1J7IQK7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0092300 | 14 | ||
| – | Ribosomal RNA small subunit methyltransferase F; TAIR: AT2G22400.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase; TrEMBL-Plants: tr|I1LNJ4|I1LNJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0092300 | 14 | ||
| – | Ribosomal RNA small subunit methyltransferase b; TAIR: AT4G26600.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q922K7|NOP2_MOUSE Probable 28S rRNA (cytosine-C(5))-methyltransferase; TrEMBL-Plants: tr|I1N087|I1N087_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0141300 | 21 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 8.33 |