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PR02011

Source: PRINTS

Description

RNA (C5-cytosine) methyltransferase NCL1 subfamily signature

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016428
Molecular function TRNA (cytosine-5-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing 5-methylcytosine.
Subterm of

Associated Lotus transcripts 7

Transcript Name Description Predicted domains Domain count
Lj0g3v0259609.1
– PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like [Glycine max] gi|356525455|ref|XP_003531340.1|
Domains
10
Lj6g3v0550640.2
– TRNA (cytosine-5-)-methyltransferase NSUN2 [Medicago truncatula] gi|357463293|ref|XP_003601928.1|
Domains
14
Lj6g3v0550640.3
– PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like [Glycine max] gi|356538146|ref|XP_003537565.1|
Domains
15
LotjaGi4g1v0395400.1
– Ribosomal RNA small subunit methyltransferase F; TAIR: AT2G22400.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase; TrEMBL-Plants: tr|A0A0B2PBC2|A0A0B2PBC2_GLYSO tRNA (Cytosine(34)-C(5))-methyltransferase; Found in the gene: LotjaGi4g1v0395400
Domains
14
LotjaGi6g1v0092300.1
– Ribosomal RNA small subunit methyltransferase F; TAIR: AT2G22400.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase; TrEMBL-Plants: tr|A0A0B2SJ66|A0A0B2SJ66_GLYSO tRNA (Cytosine(34)-C(5))-methyltransferase; Found in the gene: LotjaGi6g1v0092300
Domains
14
LotjaGi6g1v0092300.2
– Ribosomal RNA small subunit methyltransferase F; TAIR: AT2G22400.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase; TrEMBL-Plants: tr|A0A1J7IQK7|A0A1J7IQK7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0092300
Domains
14
LotjaGi6g1v0092300.3
– Ribosomal RNA small subunit methyltransferase F; TAIR: AT2G22400.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase; TrEMBL-Plants: tr|I1LNJ4|I1LNJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0092300
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 14.29