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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0607050 |
| Transcript ID | Lj6g3v0607050.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: polygalacturonase-like [Glycine max] gi|356551848|ref|XP_003544285.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 22 | 22 | – | – | |
| PANTHER | 1 | 336 | 336 | 3.20E-182 | – | |
| Phobius | 1 | 22 | 22 | – | – | |
| SignalP | 1 | 22 | 22 | – | – | |
| Phobius | 1 | 6 | 6 | – | – | |
| PANTHER | 1 | 336 | 336 | 3.20E-182 | – | |
| SignalP | 1 | 22 | 22 | – | – | |
| Phobius | 7 | 17 | 11 | – | – | |
| Gene3D | 9 | 330 | 322 | 1.50E-90 | ||
| SUPERFAMILY | 10 | 325 | 316 | 1.15E-94 | ||
| Phobius | 18 | 22 | 5 | – | – | |
| Phobius | 23 | 341 | 319 | – | – | |
| Pfam | 89 | 318 | 230 | 2.20E-76 | ||
| SMART | 115 | 141 | 27 | 230 | ||
| SMART | 142 | 163 | 22 | 3200 | ||
| ProSitePatterns | 172 | 185 | 14 | – | ||
| SMART | 195 | 216 | 22 | 0.51 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of Lj6g3v0607050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0607050.1, powered by CORGI.
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