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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0802310 |
| Transcript ID | Lj6g3v0802310.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Nucleotide-binding oligomerization domain-containing protein [Medicago truncatula] gi|357459937|ref|XP_003600250.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 38 | 38 | 9.10E-166 | – | |
| Phobius | 1 | 569 | 569 | – | – | |
| PANTHER | 1 | 38 | 38 | 9.10E-166 | – | |
| SUPERFAMILY | 11 | 194 | 184 | 5.61E-41 | – | |
| PANTHER | 62 | 222 | 161 | 9.10E-166 | – | |
| PANTHER | 62 | 222 | 161 | 9.10E-166 | – | |
| Gene3D | 63 | 214 | 152 | 1.80E-22 | ||
| SMART | 128 | 155 | 28 | 54 | – | |
| SMART | 156 | 183 | 28 | 4.5 | – | |
| Gene3D | 227 | 342 | 116 | 1.50E-18 | ||
| SUPERFAMILY | 243 | 459 | 217 | 5.61E-41 | – | |
| PANTHER | 244 | 539 | 296 | 9.10E-166 | – | |
| PANTHER | 244 | 539 | 296 | 9.10E-166 | – | |
| Pfam | 287 | 307 | 21 | 0.014 | ||
| SMART | 288 | 315 | 28 | 0.52 | – | |
| Pfam | 315 | 337 | 23 | 0.0042 | ||
| SMART | 316 | 343 | 28 | 92 | – | |
| Gene3D | 363 | 472 | 110 | 4.00E-10 | ||
| SUPERFAMILY | 477 | 683 | 207 | 3.06E-09 | ||
| Gene3D | 485 | 690 | 206 | 4.40E-09 | ||
| Phobius | 570 | 588 | 19 | – | – | |
| Phobius | 589 | 1245 | 657 | – | – | |
| Pfam | 750 | 925 | 176 | 1.10E-13 | ||
| MobiDBLite | 1092 | 1112 | 21 | – | – | |
| Coils | 1124 | 1151 | 28 | – | – | |
| Phobius | 1246 | 1268 | 23 | – | – | |
| Phobius | 1269 | 1279 | 11 | – | – | |
| Phobius | 1280 | 1300 | 21 | – | – | |
| Phobius | 1301 | 1375 | 75 | – | – | |
| Coils | 1375 | 1375 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v0802310.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0802310.1, powered by CORGI.
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