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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0803350 |
| Transcript ID | Lj6g3v0803350.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Ankyrin repeat-containing protein [Medicago truncatula] gi|357494239|ref|XP_003617408.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 171 | 171 | – | – | |
| ProSiteProfiles | 29 | 155 | 127 | 13.018 | ||
| SMART | 29 | 59 | 31 | 200 | ||
| Gene3D | 30 | 220 | 191 | 4.90E-18 | ||
| PANTHER | 33 | 247 | 215 | 3.40E-222 | – | |
| SUPERFAMILY | 33 | 214 | 182 | 8.55E-18 | ||
| PANTHER | 33 | 247 | 215 | 3.40E-222 | – | |
| CDD | 33 | 142 | 110 | 2.33E-12 | – | |
| SMART | 64 | 93 | 30 | 6 | ||
| CDD | 97 | 210 | 114 | 1.44E-04 | – | |
| SMART | 99 | 128 | 30 | 7 | ||
| Phobius | 172 | 192 | 21 | – | – | |
| Phobius | 193 | 471 | 279 | – | – | |
| SUPERFAMILY | 241 | 269 | 29 | 8.55E-18 | ||
| TMHMM | 315 | 337 | 23 | – | – | |
| PANTHER | 320 | 626 | 307 | 3.40E-222 | – | |
| PANTHER | 320 | 626 | 307 | 3.40E-222 | – | |
| Gene3D | 366 | 454 | 89 | 4.90E-18 | ||
| Pfam | 463 | 574 | 112 | 4.00E-28 | ||
| TMHMM | 471 | 493 | 23 | – | – | |
| Phobius | 472 | 490 | 19 | – | – | |
| Phobius | 491 | 509 | 19 | – | – | |
| TMHMM | 508 | 530 | 23 | – | – | |
| Phobius | 510 | 539 | 30 | – | – | |
| Phobius | 540 | 550 | 11 | – | – | |
| TMHMM | 551 | 573 | 23 | – | – | |
| Phobius | 551 | 577 | 27 | – | – | |
| Phobius | 578 | 582 | 5 | – | – | |
| Phobius | 583 | 602 | 20 | – | – | |
| TMHMM | 583 | 605 | 23 | – | – | |
| Phobius | 603 | 626 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v0803350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0803350.1, powered by CORGI.
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