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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0857630 |
| Transcript ID | Lj6g3v0857630.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like isoform X1 [Cicer arietinum] gi|502128823|ref|XP_004500093.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 276 | 271 | 0 | – | |
| PANTHER | 6 | 276 | 271 | 0 | – | |
| ProSiteProfiles | 77 | 112 | 36 | 7.443 | ||
| ProSiteProfiles | 113 | 147 | 35 | 5.568 | ||
| ProSiteProfiles | 148 | 178 | 31 | 6.895 | ||
| Pfam | 153 | 175 | 23 | 0.029 | ||
| ProSiteProfiles | 179 | 213 | 35 | 12.003 | ||
| Pfam | 181 | 210 | 30 | 3.80E-08 | ||
| TIGRFAM | 181 | 210 | 30 | 7.60E-08 | ||
| ProSiteProfiles | 241 | 275 | 35 | 10.819 | ||
| Pfam | 243 | 273 | 31 | 7.60E-07 | ||
| TIGRFAM | 243 | 276 | 34 | 1.10E-05 | ||
| Pfam | 338 | 369 | 32 | 1.60E-05 | ||
| ProSiteProfiles | 342 | 372 | 31 | 10.972 | ||
| PANTHER | 343 | 652 | 310 | 0 | – | |
| PANTHER | 343 | 652 | 310 | 0 | – | |
| TIGRFAM | 344 | 375 | 32 | 2.00E-07 | ||
| Gene3D | 349 | 400 | 52 | 3.30E-04 | ||
| Pfam | 372 | 419 | 48 | 3.30E-11 | ||
| ProSiteProfiles | 373 | 407 | 35 | 13.11 | ||
| TIGRFAM | 375 | 409 | 35 | 5.70E-09 | ||
| ProSiteProfiles | 408 | 442 | 35 | 5.448 | ||
| ProSiteProfiles | 443 | 473 | 31 | 8.21 | ||
| Gene3D | 444 | 480 | 37 | 3.30E-04 | ||
| Pfam | 448 | 473 | 26 | 4.60E-04 | ||
| TIGRFAM | 448 | 473 | 26 | 5.50E-04 | ||
| ProSiteProfiles | 474 | 508 | 35 | 10.709 | ||
| TIGRFAM | 477 | 510 | 34 | 1.10E-06 | ||
| Pfam | 477 | 520 | 44 | 3.60E-09 | ||
| ProSiteProfiles | 509 | 544 | 36 | 8.243 | ||
| TIGRFAM | 511 | 546 | 36 | 0.0023 | ||
| Gene3D | 513 | 629 | 117 | 3.30E-04 | ||
| ProSiteProfiles | 545 | 575 | 31 | 7.848 | ||
| Pfam | 549 | 572 | 24 | 0.013 | ||
| ProSiteProfiles | 577 | 607 | 31 | 5.897 | ||
| ProSiteProfiles | 610 | 645 | 36 | 5.568 | ||
| Pfam | 647 | 771 | 125 | 5.80E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj6g3v0857630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0857630.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.