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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0908780 |
| Transcript ID | Lj6g3v0908780.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cicer arietinum] gi|502128963|ref|XP_004500137.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 142 | 142 | – | – | |
| PANTHER | 13 | 64 | 52 | 0 | – | |
| PANTHER | 13 | 64 | 52 | 0 | – | |
| Coils | 16 | 36 | 21 | – | – | |
| PANTHER | 98 | 721 | 624 | 0 | – | |
| PANTHER | 98 | 721 | 624 | 0 | – | |
| Gene3D | 135 | 353 | 219 | 3.00E-79 | ||
| ProSiteProfiles | 149 | 177 | 29 | 12.208 | ||
| CDD | 151 | 355 | 205 | 1.24E-88 | – | |
| SMART | 168 | 369 | 202 | 1.20E-53 | ||
| Pfam | 173 | 342 | 170 | 2.10E-44 | ||
| ProSiteProfiles | 180 | 354 | 175 | 30.472 | ||
| SUPERFAMILY | 221 | 506 | 286 | 1.08E-65 | ||
| ProSitePatterns | 300 | 308 | 9 | – | ||
| Gene3D | 354 | 519 | 166 | 4.90E-44 | ||
| ProSiteProfiles | 380 | 528 | 149 | 20.831 | ||
| Pfam | 386 | 489 | 104 | 2.90E-28 | ||
| CDD | 396 | 497 | 102 | 4.07E-31 | – | |
| SMART | 404 | 489 | 86 | 1.60E-30 | ||
| Coils | 527 | 574 | 48 | – | – | |
| Coils | 601 | 621 | 21 | – | – | |
| MobiDBLite | 606 | 659 | 54 | – | – | |
| MobiDBLite | 677 | 744 | 68 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj6g3v0908780.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0908780.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.