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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0938290 |
| Transcript ID | Lj6g3v0938290.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g49730-like [Cucumis sativus] gi|449463822|ref|XP_004149630.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 458 | 458 | 0 | – | |
| PANTHER | 1 | 458 | 458 | 0 | – | |
| ProSiteProfiles | 1 | 28 | 28 | 6.5 | ||
| ProSiteProfiles | 30 | 64 | 35 | 10.238 | ||
| TIGRFAM | 34 | 66 | 33 | 4.90E-07 | ||
| Pfam | 61 | 93 | 33 | 1.40E-09 | ||
| Gene3D | 65 | 274 | 210 | 1.80E-05 | ||
| ProSiteProfiles | 65 | 95 | 31 | 9.931 | ||
| TIGRFAM | 67 | 93 | 27 | 1.40E-05 | ||
| Pfam | 97 | 127 | 31 | 1.30E-05 | ||
| ProSiteProfiles | 99 | 133 | 35 | 10.983 | ||
| TIGRFAM | 103 | 135 | 33 | 2.00E-06 | ||
| Pfam | 133 | 182 | 50 | 2.70E-17 | ||
| ProSiteProfiles | 134 | 168 | 35 | 12.595 | ||
| TIGRFAM | 136 | 170 | 35 | 1.90E-08 | ||
| ProSiteProfiles | 169 | 203 | 35 | 12.529 | ||
| TIGRFAM | 172 | 205 | 34 | 9.70E-10 | ||
| Pfam | 199 | 231 | 33 | 4.00E-12 | ||
| ProSiteProfiles | 204 | 238 | 35 | 12.847 | ||
| TIGRFAM | 206 | 239 | 34 | 3.30E-10 | ||
| ProSiteProfiles | 239 | 273 | 35 | 9.262 | ||
| Pfam | 242 | 271 | 30 | 0.028 | ||
| Coils | 249 | 269 | 21 | – | – | |
| Pfam | 273 | 320 | 48 | 3.30E-11 | ||
| ProSiteProfiles | 274 | 308 | 35 | 11.904 | ||
| TIGRFAM | 277 | 309 | 33 | 7.70E-08 | ||
| ProSiteProfiles | 309 | 343 | 35 | 8.21 | ||
| TIGRFAM | 312 | 341 | 30 | 7.10E-05 | ||
| ProSiteProfiles | 346 | 381 | 36 | 5.075 | ||
| ProSiteProfiles | 382 | 416 | 35 | 8.616 | ||
| Pfam | 385 | 413 | 29 | 0.019 | ||
| Coils | 459 | 479 | 21 | – | – | |
| MobiDBLite | 464 | 494 | 31 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v0938290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0938290.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.