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Lj6g3v1038800.2

Overview

Field Value
Gene ID Lj6g3v1038800
Transcript ID Lj6g3v1038800.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1-like isoform X3 [Cicer arietinum] gi|502134077|ref|XP_004501992.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF036497
1 376 376 2.70E-61
IPR022697
SUPERFAMILY
SSF51735
1 190 190 3.94E-19
IPR016040
Gene3D
G3DSA:3.40.50.720
1 192 192 2.50E-49
IPR016040
Phobius
SIGNAL_PEPTIDE_N_REGION
1 2 2 – –
PANTHER
PTHR21499:SF33
1 373 373 1.00E-242 –
PANTHER
PTHR21499
1 373 373 1.00E-242 –
ProSiteProfiles
PS51257
1 16 16 5 –
Phobius
SIGNAL_PEPTIDE
1 16 16 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
3 11 9 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
12 16 5 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
17 376 360 – –
SUPERFAMILY
SSF55347
171 356 186 4.64E-43 –
Pfam
PF00742
171 369 199 6.80E-47
IPR001342
Gene3D
G3DSA:3.30.360.10
193 351 159 1.10E-51 –
ProSitePatterns
PS01042
217 239 23 –
IPR019811

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004412
Molecular function Homoserine dehydrogenase activity Catalysis of the reaction: L-homoserine + NADP+ = L-aspartate-4-semialdehyde + NADPH + H+.
Subterm of
GO:0006520
Biological process Cellular amino acid metabolic process The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj6g3v1038800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1038800.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.