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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1093600 |
| Transcript ID | Lj6g3v1093600.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Cicer arietinum] gi|502086682|ref|XP_004488292.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 156 | 144 | 0 | – | |
| PANTHER | 13 | 156 | 144 | 0 | – | |
| ProSiteProfiles | 89 | 123 | 35 | 9.975 | ||
| TIGRFAM | 91 | 125 | 35 | 1.60E-04 | ||
| Pfam | 91 | 119 | 29 | 0.081 | ||
| ProSiteProfiles | 188 | 222 | 35 | 10.128 | ||
| TIGRFAM | 192 | 223 | 32 | 1.80E-05 | ||
| Pfam | 192 | 232 | 41 | 1.00E-08 | ||
| Gene3D | 192 | 231 | 40 | 1.20E-09 | ||
| PANTHER | 257 | 671 | 415 | 0 | – | |
| PANTHER | 257 | 671 | 415 | 0 | – | |
| ProSiteProfiles | 258 | 288 | 31 | 7.191 | ||
| TIGRFAM | 263 | 291 | 29 | 0.0026 | ||
| Pfam | 263 | 289 | 27 | 0.0096 | ||
| SUPERFAMILY | 265 | 285 | 21 | 7.11E-07 | ||
| ProSiteProfiles | 289 | 323 | 35 | 11.4 | ||
| Pfam | 291 | 321 | 31 | 9.10E-06 | ||
| TIGRFAM | 291 | 324 | 34 | 1.80E-04 | ||
| ProSiteProfiles | 359 | 389 | 31 | 6.226 | ||
| ProSiteProfiles | 390 | 424 | 35 | 8.298 | ||
| Pfam | 392 | 421 | 30 | 9.80E-06 | ||
| ProSiteProfiles | 460 | 490 | 31 | 5.766 | ||
| Pfam | 465 | 488 | 24 | 0.0061 | ||
| SUPERFAMILY | 467 | 653 | 187 | 7.11E-07 | ||
| Gene3D | 468 | 651 | 184 | 1.20E-09 | ||
| Pfam | 492 | 540 | 49 | 3.90E-12 | ||
| ProSiteProfiles | 493 | 527 | 35 | 12.2 | ||
| TIGRFAM | 496 | 528 | 33 | 2.40E-08 | ||
| ProSiteProfiles | 528 | 558 | 31 | 8.473 | ||
| TIGRFAM | 530 | 564 | 35 | 0.0011 | ||
| ProSiteProfiles | 564 | 594 | 31 | 5.689 | ||
| ProSiteProfiles | 630 | 664 | 35 | 7.191 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1093600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1093600.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.