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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1126280 |
| Transcript ID | Lj6g3v1126280.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Glycine max] gi|356532886|ref|XP_003535000.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | – | – | |
| SignalP | 1 | 22 | 22 | – | – | |
| Phobius | 1 | 24 | 24 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 4 | 15 | 12 | – | – | |
| PANTHER | 14 | 28 | 15 | 1.60E-266 | – | |
| PANTHER | 14 | 28 | 15 | 1.60E-266 | – | |
| Phobius | 16 | 24 | 9 | – | – | |
| Phobius | 25 | 496 | 472 | – | – | |
| MobiDBLite | 43 | 62 | 20 | – | – | |
| PANTHER | 46 | 476 | 431 | 1.60E-266 | – | |
| PANTHER | 46 | 476 | 431 | 1.60E-266 | – | |
| Gene3D | 111 | 199 | 89 | 2.90E-04 | ||
| ProSiteProfiles | 134 | 168 | 35 | 8.846 | ||
| Pfam | 137 | 166 | 30 | 0.031 | ||
| ProSiteProfiles | 169 | 198 | 30 | 6.38 | ||
| Pfam | 171 | 215 | 45 | 3.70E-11 | ||
| TIGRFAM | 171 | 204 | 34 | 1.30E-05 | ||
| ProSiteProfiles | 204 | 238 | 35 | 10.052 | ||
| TIGRFAM | 207 | 240 | 34 | 1.80E-04 | ||
| ProSiteProfiles | 239 | 274 | 36 | 10.797 | ||
| Pfam | 242 | 269 | 28 | 1.00E-04 | ||
| TIGRFAM | 244 | 276 | 33 | 1.10E-07 | ||
| ProSiteProfiles | 275 | 309 | 35 | 9.164 | ||
| Pfam | 278 | 307 | 30 | 0.059 | ||
| ProSiteProfiles | 310 | 344 | 35 | 7.202 | ||
| Pfam | 313 | 339 | 27 | 0.12 | ||
| ProSiteProfiles | 345 | 379 | 35 | 11.257 | ||
| Pfam | 346 | 391 | 46 | 2.00E-10 | ||
| Gene3D | 348 | 468 | 121 | 2.90E-04 | ||
| TIGRFAM | 348 | 381 | 34 | 1.10E-06 | ||
| ProSiteProfiles | 380 | 414 | 35 | 7.07 | ||
| Pfam | 415 | 461 | 47 | 2.30E-14 | ||
| ProSiteProfiles | 415 | 449 | 35 | 11.312 | ||
| TIGRFAM | 419 | 451 | 33 | 2.40E-06 | ||
| Coils | 428 | 448 | 21 | – | – | |
| ProSiteProfiles | 450 | 486 | 37 | 6.752 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1126280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1126280.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.