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Lj6g3v1270820.1

Overview

Field Value
Gene ID Lj6g3v1270820
Transcript ID Lj6g3v1270820.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140-like [Glycine max] gi|356532704|ref|XP_003534911.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 28 28 – –
PANTHER
PTHR27006:SF21
26 59 34 1.90E-149 –
PANTHER
PTHR27006
26 59 34 1.90E-149 –
TMHMM
TMhelix
28 50 23 – –
Phobius
TRANSMEMBRANE
29 49 21 – –
Gene3D
G3DSA:3.30.200.20
38 71 34 3.20E-33 –
Phobius
CYTOPLASMIC_DOMAIN
50 279 230 – –
PANTHER
PTHR27006:SF21
87 279 193 1.90E-149 –
PANTHER
PTHR27006
87 279 193 1.90E-149 –
SUPERFAMILY
SSF56112
88 279 192 2.23E-55
IPR011009
Gene3D
G3DSA:3.30.200.20
103 177 75 3.20E-33 –
ProSiteProfiles
PS50011
115 279 165 29.503
IPR000719
SMART
SM00220
115 277 163 4.30E-08
IPR000719
Pfam
PF07714
119 274 156 8.70E-34
IPR001245
Gene3D
G3DSA:1.10.510.10
178 279 102 6.10E-27 –
ProSitePatterns
PS00108
236 248 13 –
IPR008271

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj6g3v1270820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1270820.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.