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Lj6g3v1316270.1

Overview

Field Value
Gene ID Lj6g3v1316270
Transcript ID Lj6g3v1316270.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Switch 2 [Theobroma cacao] gi|508707557|gb|EOX99453.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 52 52 – –
MobiDBLite
mobidb-lite
78 105 28 – –
PANTHER
PTHR10799:SF65
88 426 339 1.50E-289 –
PANTHER
PTHR10799
88 426 339 1.50E-289 –
SUPERFAMILY
SSF52540
137 383 247 1.40E-55
IPR027417
Gene3D
G3DSA:3.40.50.300
141 327 187 5.10E-26
IPR027417
SMART
SM00487
146 341 196 1.70E-30
IPR014001
ProSiteProfiles
PS51192
162 333 172 19.198
IPR014001
Pfam
PF00176
164 419 256 9.90E-54
IPR000330
CDD
cd00046
169 314 146 2.38E-19 –
SUPERFAMILY
SSF52540
277 331 55 3.39E-47
IPR027417
PANTHER
PTHR10799
460 655 196 1.50E-289 –
PANTHER
PTHR10799:SF65
460 655 196 1.50E-289 –
SUPERFAMILY
SSF52540
529 654 126 3.39E-47
IPR027417
Gene3D
G3DSA:3.40.50.300
533 653 121 3.50E-17
IPR027417
CDD
cd00079
533 655 123 1.51E-22 –
Pfam
PF00271
539 651 113 9.20E-18
IPR001650
ProSiteProfiles
PS51194
542 655 114 15.065
IPR001650
SMART
SM00490
568 651 84 1.70E-22
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj6g3v1316270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1316270.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.