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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1318340 |
| Transcript ID | Lj6g3v1318340.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Coatomer subunit beta'-2 [Medicago truncatula] gi|357468471|ref|XP_003604520.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 25 | 25 | – | – | |
| PANTHER | 38 | 319 | 282 | 0 | – | |
| PANTHER | 38 | 319 | 282 | 0 | – | |
| ProSiteProfiles | 49 | 79 | 31 | 6.434 | ||
| Gene3D | 53 | 112 | 60 | 7.10E-17 | ||
| Pfam | 60 | 78 | 19 | 0.17 | ||
| SUPERFAMILY | 79 | 118 | 40 | 2.44E-09 | ||
| ProSiteProfiles | 80 | 110 | 31 | 8.561 | ||
| Pfam | 82 | 107 | 26 | 5.30E-04 | ||
| TIGRFAM | 82 | 108 | 27 | 0.0023 | ||
| ProSiteProfiles | 152 | 182 | 31 | 6.215 | ||
| SUPERFAMILY | 157 | 321 | 165 | 2.44E-09 | ||
| ProSiteProfiles | 183 | 217 | 35 | 8.199 | ||
| Pfam | 185 | 214 | 30 | 8.40E-04 | ||
| TIGRFAM | 185 | 217 | 33 | 0.0019 | ||
| ProSiteProfiles | 218 | 252 | 35 | 5.941 | ||
| ProSiteProfiles | 253 | 283 | 31 | 7.706 | ||
| Pfam | 258 | 282 | 25 | 0.019 | ||
| Pfam | 283 | 331 | 49 | 1.20E-09 | ||
| Gene3D | 283 | 338 | 56 | 7.10E-17 | ||
| ProSiteProfiles | 284 | 318 | 35 | 10.139 | ||
| TIGRFAM | 286 | 320 | 35 | 0.0032 | ||
| ProSiteProfiles | 319 | 353 | 35 | 6.478 | ||
| PANTHER | 355 | 664 | 310 | 0 | – | |
| PANTHER | 355 | 664 | 310 | 0 | – | |
| ProSiteProfiles | 385 | 419 | 35 | 10.523 | ||
| Pfam | 387 | 416 | 30 | 0.036 | ||
| ProSiteProfiles | 420 | 454 | 35 | 5.667 | ||
| ProSiteProfiles | 455 | 485 | 31 | 8.353 | ||
| TIGRFAM | 458 | 488 | 31 | 4.20E-04 | ||
| Gene3D | 458 | 524 | 67 | 7.10E-17 | ||
| ProSiteProfiles | 486 | 520 | 35 | 11.17 | ||
| Pfam | 486 | 532 | 47 | 4.40E-08 | ||
| TIGRFAM | 488 | 522 | 35 | 5.20E-06 | ||
| ProSiteProfiles | 521 | 551 | 31 | 6.566 | ||
| ProSiteProfiles | 557 | 587 | 31 | 8.188 | ||
| Pfam | 560 | 584 | 25 | 0.0011 | ||
| TIGRFAM | 561 | 584 | 24 | 2.60E-04 | ||
| Gene3D | 571 | 643 | 73 | 7.10E-17 | ||
| ProSiteProfiles | 589 | 619 | 31 | 6.39 | ||
| SUPERFAMILY | 593 | 644 | 52 | 2.44E-09 | ||
| ProSiteProfiles | 623 | 657 | 35 | 7.629 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1318340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1318340.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.