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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1356460 |
| Transcript ID | Lj6g3v1356460.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g34400-like [Cicer arietinum] gi|502085652|ref|XP_004487967.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 522 | 520 | 1.10E-300 | – | |
| PANTHER | 3 | 522 | 520 | 1.10E-300 | – | |
| ProSiteProfiles | 37 | 72 | 36 | 7.772 | ||
| ProSiteProfiles | 108 | 138 | 31 | 8.046 | ||
| Pfam | 113 | 139 | 27 | 0.011 | ||
| Gene3D | 137 | 192 | 56 | 3.50E-10 | ||
| ProSiteProfiles | 139 | 174 | 36 | 11.959 | ||
| SUPERFAMILY | 140 | 166 | 27 | 3.32E-05 | ||
| Pfam | 141 | 170 | 30 | 9.10E-09 | ||
| TIGRFAM | 141 | 176 | 36 | 2.80E-08 | ||
| ProSiteProfiles | 175 | 209 | 35 | 5.097 | ||
| SUPERFAMILY | 200 | 369 | 170 | 1.19E-05 | ||
| ProSiteProfiles | 210 | 240 | 31 | 8.396 | ||
| TIGRFAM | 216 | 241 | 26 | 0.0021 | ||
| ProSiteProfiles | 241 | 275 | 35 | 13.055 | ||
| Pfam | 241 | 288 | 48 | 4.10E-13 | ||
| TIGRFAM | 243 | 276 | 34 | 3.90E-09 | ||
| Gene3D | 244 | 277 | 34 | 3.50E-10 | ||
| ProSiteProfiles | 276 | 310 | 35 | 6.281 | ||
| ProSiteProfiles | 311 | 341 | 31 | 9.372 | ||
| Gene3D | 312 | 369 | 58 | 3.50E-10 | ||
| TIGRFAM | 316 | 341 | 26 | 3.60E-04 | ||
| SUPERFAMILY | 318 | 374 | 57 | 3.32E-05 | ||
| Pfam | 341 | 391 | 51 | 4.80E-09 | ||
| ProSiteProfiles | 342 | 376 | 35 | 11.159 | ||
| TIGRFAM | 345 | 373 | 29 | 1.30E-06 | ||
| ProSiteProfiles | 379 | 409 | 31 | 7.344 | ||
| SUPERFAMILY | 414 | 501 | 88 | 3.32E-05 | ||
| ProSiteProfiles | 415 | 445 | 31 | 8.517 | ||
| Pfam | 418 | 445 | 28 | 9.00E-04 | ||
| TIGRFAM | 419 | 444 | 26 | 0.0023 | ||
| ProSiteProfiles | 447 | 477 | 31 | 5.963 | ||
| Gene3D | 475 | 500 | 26 | 3.50E-10 | ||
| ProSiteProfiles | 481 | 515 | 35 | 6.292 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1356460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1356460.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.