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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1356520 |
| Transcript ID | Lj6g3v1356520.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pumilio homolog 5-like [Cicer arietinum] gi|502085772|ref|XP_004488002.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 973 | 973 | 0 | – | |
| PANTHER | 1 | 973 | 973 | 0 | – | |
| MobiDBLite | 1 | 25 | 25 | – | – | |
| MobiDBLite | 141 | 174 | 34 | – | – | |
| MobiDBLite | 212 | 262 | 51 | – | – | |
| MobiDBLite | 507 | 534 | 28 | – | – | |
| ProSiteProfiles | 628 | 968 | 341 | 130.438 | ||
| Gene3D | 630 | 972 | 343 | 4.00E-135 | ||
| SUPERFAMILY | 633 | 965 | 333 | 1.90E-114 | ||
| CDD | 643 | 964 | 322 | 2.71E-165 | ||
| SMART | 648 | 683 | 36 | 7.10E-05 | ||
| ProSiteProfiles | 648 | 683 | 36 | 9.807 | ||
| Pfam | 649 | 678 | 30 | 6.40E-06 | ||
| ProSiteProfiles | 684 | 719 | 36 | 10.95 | ||
| SMART | 684 | 719 | 36 | 8.20E-08 | ||
| Pfam | 686 | 716 | 31 | 6.10E-08 | ||
| ProSiteProfiles | 720 | 755 | 36 | 10.95 | ||
| SMART | 720 | 755 | 36 | 5.30E-06 | ||
| Pfam | 723 | 750 | 28 | 1.70E-04 | ||
| ProSiteProfiles | 756 | 791 | 36 | 9.504 | ||
| SMART | 756 | 791 | 36 | 9.90E-06 | ||
| Pfam | 764 | 790 | 27 | 7.70E-06 | ||
| ProSiteProfiles | 792 | 828 | 37 | 10.95 | ||
| SMART | 792 | 828 | 37 | 5.50E-08 | ||
| Pfam | 797 | 827 | 31 | 1.60E-06 | ||
| ProSiteProfiles | 829 | 864 | 36 | 11.207 | ||
| SMART | 829 | 864 | 36 | 1.20E-05 | ||
| Pfam | 830 | 863 | 34 | 1.20E-05 | ||
| ProSiteProfiles | 865 | 900 | 36 | 9.737 | ||
| SMART | 865 | 900 | 36 | 1.90E-07 | ||
| Pfam | 865 | 898 | 34 | 1.20E-07 | ||
| ProSiteProfiles | 901 | 942 | 42 | 10.74 | ||
| SMART | 907 | 942 | 36 | 1.70E-08 | ||
| Pfam | 910 | 937 | 28 | 8.90E-08 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj6g3v1356520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1356520.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.