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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1358600 |
| Transcript ID | Lj6g3v1358600.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: plasma membrane ATPase 4-like isoform 1 [Glycine max] gi|356556196|ref|XP_003546412.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 66 | 66 | – | – | |
| PANTHER | 1 | 787 | 787 | 0 | – | |
| PANTHER | 1 | 787 | 787 | 0 | – | |
| SMART | 19 | 91 | 73 | 3.70E-23 | ||
| SUPERFAMILY | 19 | 136 | 118 | 3.27E-86 | – | |
| Pfam | 23 | 85 | 63 | 2.80E-14 | ||
| Gene3D | 36 | 70 | 35 | 1.70E-40 | ||
| TIGRFAM | 38 | 810 | 773 | 0 | ||
| Phobius | 67 | 90 | 24 | – | – | |
| TMHMM | 67 | 89 | 23 | – | – | |
| Gene3D | 71 | 130 | 60 | 5.60E-23 | ||
| Phobius | 91 | 101 | 11 | – | – | |
| TMHMM | 99 | 118 | 20 | – | – | |
| Phobius | 102 | 118 | 17 | – | – | |
| Pfam | 104 | 324 | 221 | 1.20E-58 | ||
| TIGRFAM | 105 | 353 | 249 | 2.50E-37 | ||
| Phobius | 119 | 244 | 126 | – | – | |
| Gene3D | 131 | 233 | 103 | 1.70E-40 | ||
| SUPERFAMILY | 136 | 233 | 98 | 7.72E-28 | – | |
| PRINTS | 183 | 197 | 15 | 2.50E-41 | – | |
| SUPERFAMILY | 233 | 327 | 95 | 3.27E-86 | – | |
| Phobius | 245 | 271 | 27 | – | – | |
| TMHMM | 246 | 268 | 23 | – | – | |
| Gene3D | 249 | 349 | 101 | 5.60E-23 | ||
| Phobius | 272 | 282 | 11 | – | – | |
| TMHMM | 283 | 305 | 23 | – | – | |
| Phobius | 283 | 305 | 23 | – | – | |
| Phobius | 306 | 650 | 345 | – | – | |
| SUPERFAMILY | 329 | 639 | 311 | 7.83E-40 | ||
| Pfam | 329 | 606 | 278 | 2.70E-18 | – | |
| PRINTS | 333 | 347 | 15 | 2.50E-41 | – | |
| ProSitePatterns | 335 | 341 | 7 | – | ||
| Gene3D | 350 | 491 | 142 | 4.50E-32 | ||
| PRINTS | 449 | 467 | 19 | 2.00E-58 | ||
| PRINTS | 487 | 498 | 12 | 2.50E-41 | – | |
| PRINTS | 509 | 519 | 11 | 2.50E-41 | – | |
| Gene3D | 552 | 849 | 298 | 1.60E-100 | ||
| PRINTS | 564 | 580 | 17 | 2.00E-58 | ||
| TIGRFAM | 567 | 681 | 115 | 2.90E-27 | ||
| PRINTS | 592 | 608 | 17 | 2.00E-58 | ||
| PRINTS | 592 | 611 | 20 | 2.50E-41 | – | |
| PRINTS | 615 | 627 | 13 | 2.50E-41 | – | |
| PRINTS | 623 | 648 | 26 | 2.00E-58 | ||
| SUPERFAMILY | 641 | 851 | 211 | 3.27E-86 | – | |
| Phobius | 651 | 673 | 23 | – | – | |
| TMHMM | 651 | 673 | 23 | – | – | |
| Phobius | 674 | 678 | 5 | – | – | |
| Phobius | 679 | 696 | 18 | – | – | |
| Phobius | 697 | 715 | 19 | – | – | |
| TMHMM | 715 | 737 | 23 | – | – | |
| Phobius | 716 | 737 | 22 | – | – | |
| Phobius | 738 | 758 | 21 | – | – | |
| Phobius | 759 | 778 | 20 | – | – | |
| TMHMM | 760 | 777 | 18 | – | – | |
| PRINTS | 764 | 785 | 22 | 2.00E-58 | ||
| Phobius | 779 | 789 | 11 | – | – | |
| Phobius | 790 | 811 | 22 | – | – | |
| TMHMM | 792 | 814 | 23 | – | – | |
| Phobius | 812 | 822 | 11 | – | – | |
| TMHMM | 821 | 843 | 23 | – | – | |
| Phobius | 823 | 840 | 18 | – | – | |
| PANTHER | 824 | 928 | 105 | 0 | – | |
| PANTHER | 824 | 928 | 105 | 0 | – | |
| Phobius | 841 | 955 | 115 | – | – | |
| Coils | 906 | 926 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Proton-exporting ATPase activity, phosphorylative mechanism | Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out). These transporters use a phosphorylative mechanism, which have a phosphorylated intermediate state during the ion transport cycle. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Proton export across plasma membrane | The directed movement of hydrogen ions (protons) from inside a cell, across the plasma membrane and into the extracellular region. |
Expression pattern of Lj6g3v1358600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1358600.1, powered by CORGI.
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