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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1412640 |
| Transcript ID | Lj6g3v1412640.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like [Glycine max] gi|356558657|ref|XP_003547620.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 84 | 80 | 1.80E-171 | – | |
| Pfam | 5 | 36 | 32 | 2.80E-10 | ||
| PANTHER | 5 | 84 | 80 | 1.80E-171 | – | |
| ProSiteProfiles | 9 | 43 | 35 | 12.397 | ||
| TIGRFAM | 11 | 45 | 35 | 1.00E-09 | ||
| Pfam | 43 | 92 | 50 | 4.80E-19 | ||
| ProSiteProfiles | 44 | 78 | 35 | 14.206 | ||
| TIGRFAM | 46 | 80 | 35 | 6.60E-12 | ||
| ProSiteProfiles | 79 | 113 | 35 | 9.558 | ||
| TIGRFAM | 81 | 112 | 32 | 8.40E-04 | ||
| ProSiteProfiles | 114 | 148 | 35 | 11.849 | ||
| TIGRFAM | 116 | 150 | 35 | 9.40E-10 | ||
| Pfam | 116 | 161 | 46 | 7.40E-16 | ||
| PANTHER | 120 | 313 | 194 | 1.80E-171 | – | |
| PANTHER | 120 | 313 | 194 | 1.80E-171 | – | |
| ProSiteProfiles | 149 | 183 | 35 | 11.082 | ||
| TIGRFAM | 151 | 184 | 34 | 2.70E-05 | ||
| Gene3D | 156 | 425 | 270 | 1.20E-06 | ||
| ProSiteProfiles | 184 | 218 | 35 | 9.493 | ||
| SUPERFAMILY | 187 | 329 | 143 | 2.59E-05 | – | |
| TIGRFAM | 187 | 219 | 33 | 3.30E-04 | ||
| Pfam | 215 | 247 | 33 | 9.30E-08 | ||
| ProSiteProfiles | 219 | 253 | 35 | 12.101 | ||
| TIGRFAM | 221 | 254 | 34 | 8.10E-07 | ||
| Pfam | 253 | 301 | 49 | 2.90E-10 | ||
| ProSiteProfiles | 254 | 288 | 35 | 10.501 | ||
| TIGRFAM | 257 | 289 | 33 | 7.80E-07 | ||
| ProSiteProfiles | 289 | 323 | 35 | 6.292 | ||
| ProSiteProfiles | 324 | 358 | 35 | 10.6 | ||
| Pfam | 324 | 372 | 49 | 3.90E-14 | ||
| TIGRFAM | 326 | 360 | 35 | 1.90E-06 | ||
| PANTHER | 349 | 362 | 14 | 1.80E-171 | – | |
| PANTHER | 349 | 362 | 14 | 1.80E-171 | – | |
| ProSiteProfiles | 359 | 393 | 35 | 8.999 | ||
| ProSiteProfiles | 395 | 429 | 35 | 10.523 | ||
| Pfam | 398 | 426 | 29 | 9.50E-04 | ||
| TIGRFAM | 398 | 431 | 34 | 2.10E-06 | ||
| PANTHER | 399 | 477 | 79 | 1.80E-171 | – | |
| PANTHER | 399 | 477 | 79 | 1.80E-171 | – | |
| Pfam | 429 | 476 | 48 | 7.80E-09 | ||
| ProSiteProfiles | 430 | 464 | 35 | 8.638 | ||
| ProSiteProfiles | 465 | 477 | 13 | 5.678 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1412640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1412640.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.