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Lj6g3v1629750.1

Overview

Field Value
Gene ID Lj6g3v1629750
Transcript ID Lj6g3v1629750.1
Lotus japonicus genome version MG20 v3.0
Description male sterility MS5 [Arabidopsis lyrata subsp]. lyrata] gi|297799972|ref|XP_002867870.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 49 49 – –
PANTHER
PTHR36326
25 279 255 3.30E-55 –
PANTHER
PTHR36326:SF1
25 279 255 3.30E-55 –
SUPERFAMILY
SSF48452
74 127 54 3.03E-11
IPR011990
Gene3D
G3DSA:1.25.40.10
74 250 177 7.70E-14
IPR011990
SMART
SM00028
94 127 34 460
IPR019734
ProSiteProfiles
PS50005
94 127 34 5.694
IPR019734
SMART
SM00028
190 223 34 1.00E-04
IPR019734
ProSiteProfiles
PS50293
190 223 34 10.136
IPR013026
SUPERFAMILY
SSF48452
190 249 60 3.03E-11
IPR011990
ProSiteProfiles
PS50005
190 223 34 9.765
IPR019734
Pfam
PF00515
191 218 28 3.70E-07
IPR001440
MobiDBLite
mobidb-lite
279 316 38 – –
MobiDBLite
mobidb-lite
536 573 38 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj6g3v1629750.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1629750.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.