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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1695020 |
| Transcript ID | Lj6g3v1695020.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g09410-like [Glycine max] gi|356532382|ref|XP_003534752.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 28 | 610 | 583 | 0 | – | |
| PANTHER | 28 | 610 | 583 | 0 | – | |
| ProSiteProfiles | 54 | 84 | 31 | 7.158 | ||
| Pfam | 62 | 84 | 23 | 0.0093 | ||
| SUPERFAMILY | 67 | 184 | 118 | 5.06E-07 | ||
| Gene3D | 67 | 295 | 229 | 3.30E-13 | ||
| ProSiteProfiles | 85 | 119 | 35 | 10.413 | ||
| Pfam | 87 | 116 | 30 | 1.00E-05 | ||
| TIGRFAM | 87 | 118 | 32 | 1.10E-06 | ||
| Pfam | 121 | 147 | 27 | 6.80E-05 | ||
| TIGRFAM | 121 | 146 | 26 | 4.90E-05 | ||
| ProSiteProfiles | 121 | 146 | 26 | 7.136 | ||
| ProSiteProfiles | 147 | 181 | 35 | 12.671 | ||
| SUPERFAMILY | 148 | 569 | 422 | 1.37E-05 | ||
| TIGRFAM | 149 | 179 | 31 | 6.60E-09 | ||
| Pfam | 149 | 178 | 30 | 5.60E-09 | ||
| TIGRFAM | 180 | 208 | 29 | 1.90E-06 | ||
| Pfam | 180 | 209 | 30 | 3.60E-07 | ||
| ProSiteProfiles | 182 | 208 | 27 | 6.741 | ||
| ProSiteProfiles | 209 | 239 | 31 | 9.504 | ||
| Pfam | 212 | 241 | 30 | 5.30E-05 | ||
| TIGRFAM | 212 | 241 | 30 | 1.80E-04 | ||
| SUPERFAMILY | 224 | 265 | 42 | 5.06E-07 | ||
| ProSiteProfiles | 240 | 274 | 35 | 11.06 | ||
| TIGRFAM | 243 | 273 | 31 | 2.50E-06 | ||
| Pfam | 243 | 271 | 29 | 5.40E-06 | ||
| TIGRFAM | 273 | 298 | 26 | 5.80E-04 | ||
| Pfam | 273 | 299 | 27 | 4.00E-04 | ||
| ProSiteProfiles | 302 | 332 | 31 | 8.024 | ||
| Pfam | 332 | 379 | 48 | 1.90E-07 | ||
| ProSiteProfiles | 333 | 367 | 35 | 11.378 | ||
| TIGRFAM | 336 | 367 | 32 | 2.80E-06 | ||
| ProSiteProfiles | 400 | 430 | 31 | 7.059 | ||
| Pfam | 430 | 478 | 49 | 1.40E-10 | ||
| ProSiteProfiles | 431 | 465 | 35 | 11.498 | ||
| TIGRFAM | 433 | 467 | 35 | 1.20E-06 | ||
| ProSiteProfiles | 466 | 496 | 31 | 7.18 | ||
| ProSiteProfiles | 502 | 536 | 35 | 6.84 | ||
| Pfam | 505 | 525 | 21 | 0.36 | ||
| ProSiteProfiles | 569 | 603 | 35 | 7.388 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1695020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1695020.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.