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Lj6g3v1753140.1

Overview

Field Value
Gene ID Lj6g3v1753140
Transcript ID Lj6g3v1753140.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 4-like [Cicer arietinum] gi|502079638|ref|XP_004486322.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315
92 451 360 4.00E-247 –
PANTHER
PTHR23315:SF129
92 451 360 4.00E-247 –
CDD
cd00020
162 258 97 2.97E-12 –
SUPERFAMILY
SSF48371
168 445 278 4.32E-48
IPR016024
Gene3D
G3DSA:1.25.10.10
171 448 278 2.50E-66
IPR011989
SMART
SM00185
200 240 41 0.0056
IPR000225
Pfam
PF00514
202 239 38 2.10E-07
IPR000225
ProSiteProfiles
PS50176
211 253 43 12.652
IPR000225
SMART
SM00185
241 281 41 3.3
IPR000225
SMART
SM00185
282 322 41 0.88
IPR000225
Pfam
PF00514
284 322 39 1.10E-05
IPR000225
CDD
cd00020
292 403 112 1.03E-08 –
SMART
SM00185
323 363 41 200
IPR000225
ProSiteProfiles
PS50176
334 376 43 10.237
IPR000225
SMART
SM00185
364 404 41 8
IPR000225
CDD
cd00020
369 444 76 9.41E-06 –
SMART
SM00185
406 446 41 28
IPR000225

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj6g3v1753140.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1753140.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.