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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1812150 |
| Transcript ID | Lj6g3v1812150.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g04370-like [Glycine max] gi|356557931|ref|XP_003547263.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 40 | 20 | 0 | – | |
| PANTHER | 21 | 40 | 20 | 0 | – | |
| ProSiteProfiles | 37 | 71 | 35 | 6.61 | ||
| PANTHER | 70 | 372 | 303 | 0 | – | |
| PANTHER | 70 | 372 | 303 | 0 | – | |
| ProSiteProfiles | 72 | 106 | 35 | 6.928 | ||
| ProSiteProfiles | 107 | 137 | 31 | 7.728 | ||
| Pfam | 137 | 183 | 47 | 6.40E-10 | ||
| ProSiteProfiles | 138 | 172 | 35 | 11.542 | ||
| TIGRFAM | 142 | 173 | 32 | 4.30E-07 | ||
| SUPERFAMILY | 144 | 178 | 35 | 1.66E-05 | ||
| ProSiteProfiles | 205 | 235 | 31 | 8.944 | ||
| Pfam | 210 | 236 | 27 | 3.50E-04 | ||
| TIGRFAM | 210 | 237 | 28 | 2.70E-04 | ||
| ProSiteProfiles | 236 | 270 | 35 | 11.06 | ||
| Pfam | 238 | 267 | 30 | 0.0078 | ||
| TIGRFAM | 238 | 272 | 35 | 1.00E-04 | ||
| ProSiteProfiles | 271 | 305 | 35 | 6.588 | ||
| ProSiteProfiles | 306 | 336 | 31 | 5.952 | ||
| Gene3D | 314 | 372 | 59 | 1.70E-09 | ||
| Pfam | 336 | 384 | 49 | 9.40E-13 | ||
| ProSiteProfiles | 337 | 371 | 35 | 12.638 | ||
| TIGRFAM | 339 | 372 | 34 | 1.50E-09 | ||
| ProSiteProfiles | 372 | 406 | 35 | 6.106 | ||
| ProSiteProfiles | 407 | 437 | 31 | 7.75 | ||
| PANTHER | 408 | 717 | 310 | 0 | – | |
| PANTHER | 408 | 717 | 310 | 0 | – | |
| SUPERFAMILY | 412 | 480 | 69 | 1.66E-05 | ||
| Pfam | 438 | 485 | 48 | 2.30E-10 | ||
| ProSiteProfiles | 438 | 472 | 35 | 11.498 | ||
| TIGRFAM | 440 | 473 | 34 | 7.50E-06 | ||
| ProSiteProfiles | 473 | 507 | 35 | 8.627 | ||
| ProSiteProfiles | 508 | 538 | 31 | 7.267 | ||
| Gene3D | 511 | 582 | 72 | 1.70E-09 | ||
| Pfam | 513 | 536 | 24 | 4.90E-04 | ||
| SUPERFAMILY | 515 | 573 | 59 | 1.66E-05 | ||
| ProSiteProfiles | 539 | 573 | 35 | 11.378 | ||
| TIGRFAM | 541 | 574 | 34 | 1.70E-05 | ||
| Pfam | 541 | 571 | 31 | 1.00E-04 | ||
| ProSiteProfiles | 574 | 609 | 36 | 7.958 | ||
| Pfam | 576 | 603 | 28 | 0.11 | ||
| TIGRFAM | 577 | 610 | 34 | 0.001 | ||
| SUPERFAMILY | 609 | 700 | 92 | 1.66E-05 | ||
| ProSiteProfiles | 610 | 640 | 31 | 7.629 | ||
| Pfam | 617 | 636 | 20 | 0.11 | ||
| Gene3D | 618 | 637 | 20 | 1.70E-09 | ||
| Gene3D | 670 | 695 | 26 | 1.70E-09 | ||
| ProSiteProfiles | 676 | 710 | 35 | 5.831 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1812150.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1812150.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.