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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1916090 |
| Transcript ID | Lj6g3v1916090.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula] gi|357447499|ref|XP_003594025.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 219 | 219 | 0 | – | |
| Phobius | 1 | 300 | 300 | – | – | |
| PANTHER | 1 | 219 | 219 | 0 | – | |
| Gene3D | 9 | 195 | 187 | 8.50E-24 | ||
| SUPERFAMILY | 9 | 192 | 184 | 9.64E-24 | ||
| Coils | 22 | 42 | 21 | – | – | |
| ProSiteProfiles | 39 | 193 | 155 | 21.429 | ||
| Pfam | 39 | 96 | 58 | 3.70E-07 | ||
| SMART | 39 | 69 | 31 | 11 | ||
| CDD | 74 | 194 | 121 | 7.08E-16 | – | |
| SMART | 78 | 108 | 31 | 0.33 | ||
| ProSiteProfiles | 78 | 110 | 33 | 8.576 | ||
| SMART | 112 | 141 | 30 | 17 | ||
| SMART | 149 | 178 | 30 | 720 | ||
| SMART | 183 | 219 | 37 | 250 | ||
| Phobius | 301 | 324 | 24 | – | – | |
| TMHMM | 301 | 323 | 23 | – | – | |
| Phobius | 325 | 541 | 217 | – | – | |
| Gene3D | 386 | 475 | 90 | 8.70E-07 | ||
| PANTHER | 391 | 699 | 309 | 0 | – | |
| PANTHER | 391 | 699 | 309 | 0 | – | |
| SMART | 391 | 421 | 31 | 130 | ||
| SUPERFAMILY | 393 | 475 | 83 | 2.73E-06 | ||
| CDD | 394 | 477 | 84 | 1.33E-05 | – | |
| Pfam | 534 | 646 | 113 | 3.80E-22 | ||
| Phobius | 542 | 559 | 18 | – | – | |
| TMHMM | 543 | 562 | 20 | – | – | |
| Phobius | 560 | 578 | 19 | – | – | |
| Phobius | 579 | 602 | 24 | – | – | |
| TMHMM | 582 | 604 | 23 | – | – | |
| Phobius | 603 | 621 | 19 | – | – | |
| Phobius | 622 | 645 | 24 | – | – | |
| TMHMM | 624 | 646 | 23 | – | – | |
| Phobius | 646 | 656 | 11 | – | – | |
| TMHMM | 656 | 678 | 23 | – | – | |
| Phobius | 657 | 679 | 23 | – | – | |
| Phobius | 680 | 699 | 20 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1916090.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1916090.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.