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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1946230 |
| Transcript ID | Lj6g3v1946230.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cullin-4-like [Glycine max] gi|356555528|ref|XP_003546083.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 44 | 44 | – | – | |
| SignalP | 1 | 20 | 20 | – | – | |
| PANTHER | 64 | 767 | 704 | 0 | – | |
| PANTHER | 64 | 767 | 704 | 0 | – | |
| SUPERFAMILY | 90 | 432 | 343 | 1.60E-109 | ||
| Gene3D | 93 | 215 | 123 | 4.40E-16 | – | |
| Pfam | 96 | 693 | 598 | 1.10E-207 | ||
| Gene3D | 220 | 333 | 114 | 2.80E-36 | – | |
| Gene3D | 335 | 438 | 104 | 1.30E-27 | – | |
| SUPERFAMILY | 433 | 703 | 271 | 5.89E-102 | ||
| ProSiteProfiles | 436 | 665 | 230 | 59.406 | ||
| Gene3D | 439 | 546 | 108 | 1.80E-46 | – | |
| SMART | 466 | 615 | 150 | 1.40E-75 | ||
| Gene3D | 552 | 624 | 73 | 7.70E-30 | – | |
| Gene3D | 625 | 692 | 68 | 1.10E-19 | ||
| Gene3D | 693 | 767 | 75 | 1.90E-20 | ||
| SUPERFAMILY | 704 | 767 | 64 | 2.27E-13 | ||
| SMART | 721 | 767 | 47 | 1.80E-10 | ||
| Pfam | 724 | 767 | 44 | 6.40E-12 | ||
| Coils | 765 | 767 | 3 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Ubiquitin protein ligase binding | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. |
Expression pattern of Lj6g3v1946230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1946230.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.