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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1946390 |
| Transcript ID | Lj6g3v1946390.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356525090|ref|XP_003531160.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | – | – | |
| PANTHER | 1 | 86 | 86 | 5.80E-256 | – | |
| PANTHER | 1 | 86 | 86 | 5.80E-256 | – | |
| SUPERFAMILY | 33 | 89 | 57 | 8.35E-13 | ||
| Gene3D | 35 | 86 | 52 | 7.30E-13 | ||
| SMART | 35 | 106 | 72 | 1.70E-08 | ||
| ProSiteProfiles | 36 | 86 | 51 | 11.364 | ||
| CDD | 38 | 86 | 49 | 1.27E-13 | – | |
| Pfam | 39 | 88 | 50 | 3.20E-11 | ||
| PANTHER | 109 | 522 | 414 | 5.80E-256 | – | |
| PANTHER | 109 | 522 | 414 | 5.80E-256 | – | |
| SUPERFAMILY | 138 | 219 | 82 | 2.92E-11 | ||
| Gene3D | 138 | 215 | 78 | 4.10E-13 | ||
| SMART | 138 | 216 | 79 | 2.40E-10 | ||
| ProSiteProfiles | 139 | 211 | 73 | 14.131 | ||
| CDD | 142 | 212 | 71 | 2.88E-11 | – | |
| Pfam | 142 | 211 | 70 | 2.00E-12 | ||
| SMART | 290 | 362 | 73 | 2.90E-10 | ||
| Gene3D | 290 | 346 | 57 | 3.30E-14 | ||
| ProSiteProfiles | 291 | 357 | 67 | 13.879 | ||
| SUPERFAMILY | 292 | 368 | 77 | 2.60E-12 | ||
| CDD | 294 | 346 | 53 | 2.82E-12 | – | |
| Pfam | 294 | 345 | 52 | 1.40E-11 | ||
| SUPERFAMILY | 365 | 455 | 91 | 1.61E-17 | ||
| Gene3D | 369 | 446 | 78 | 3.70E-18 | ||
| SMART | 370 | 444 | 75 | 5.90E-13 | ||
| ProSiteProfiles | 371 | 439 | 69 | 16.982 | ||
| CDD | 373 | 440 | 68 | 1.05E-20 | – | |
| Pfam | 374 | 439 | 66 | 6.30E-14 | ||
| ProSiteProfiles | 537 | 561 | 25 | 9.708 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj6g3v1946390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1946390.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.