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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1948660 |
| Transcript ID | Lj6g3v1948660.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable beta-1,3-galactosyltransferase 20-like [Cicer arietinum] gi|502078551|ref|XP_004485982.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| ProSiteProfiles | 1 | 33 | 33 | 7 | – | |
| TMHMM | 16 | 38 | 23 | – | – | |
| Phobius | 20 | 39 | 20 | – | – | |
| Phobius | 40 | 666 | 627 | – | – | |
| MobiDBLite | 88 | 121 | 34 | – | – | |
| ProSiteProfiles | 197 | 407 | 211 | 31.943 | ||
| CDD | 199 | 405 | 207 | 3.25E-22 | – | |
| SUPERFAMILY | 199 | 295 | 97 | 8.94E-25 | ||
| Pfam | 200 | 405 | 206 | 7.30E-48 | ||
| SMART | 201 | 406 | 206 | 1.80E-29 | ||
| Gene3D | 201 | 295 | 95 | 1.30E-26 | ||
| PANTHER | 269 | 666 | 398 | 0 | ||
| PANTHER | 269 | 666 | 398 | 0 | – | |
| Gene3D | 348 | 404 | 57 | 1.30E-26 | ||
| SUPERFAMILY | 348 | 407 | 60 | 8.94E-25 | ||
| Pfam | 453 | 633 | 181 | 1.80E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein glycosylation | A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of Lj6g3v1948660.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1948660.1, powered by CORGI.
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