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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1954250 |
| Transcript ID | Lj6g3v1954250.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like [Glycine max] gi|356557791|ref|XP_003547194.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 200 | 200 | 1.10E-136 | – | |
| PANTHER | 1 | 200 | 200 | 1.10E-136 | – | |
| ProSiteProfiles | 1 | 28 | 28 | 6.665 | ||
| Pfam | 16 | 74 | 59 | 9.80E-06 | ||
| ProSiteProfiles | 29 | 63 | 35 | 10.271 | ||
| TIGRFAM | 33 | 64 | 32 | 5.90E-06 | ||
| Gene3D | 38 | 197 | 160 | 1.30E-05 | ||
| ProSiteProfiles | 64 | 98 | 35 | 9.142 | ||
| TIGRFAM | 67 | 100 | 34 | 6.10E-05 | ||
| Pfam | 98 | 142 | 45 | 1.80E-14 | ||
| ProSiteProfiles | 99 | 133 | 35 | 13.899 | ||
| TIGRFAM | 101 | 134 | 34 | 6.20E-11 | ||
| ProSiteProfiles | 134 | 164 | 31 | 8.002 | ||
| TIGRFAM | 136 | 170 | 35 | 3.20E-05 | ||
| Pfam | 168 | 196 | 29 | 2.30E-06 | ||
| ProSiteProfiles | 170 | 200 | 31 | 9.635 | ||
| TIGRFAM | 172 | 197 | 26 | 0.0013 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1954250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1954250.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.