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Lj6g3v1966340.1

Overview

Field Value
Gene ID Lj6g3v1966340
Transcript ID Lj6g3v1966340.1
Lotus japonicus genome version MG20 v3.0
Description serine hydroxymethyltransferase 4 [Glycine max] gi|351724373|ref|NP_001238335.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11680
57 515 459 0
IPR001085
PIRSF
PIRSF000412
61 516 456 4.50E-174
IPR001085
SUPERFAMILY
SSF53383
66 515 450 1.04E-177
IPR015424
Hamap
MF_00051
69 515 447 44.667
IPR001085
Pfam
PF00464
70 460 391 2.40E-190
IPR001085
CDD
cd00378
72 466 395 0
IPR001085
Gene3D
G3DSA:3.40.640.10
99 359 261 1.20E-100
IPR015421
ProSitePatterns
PS00096
293 309 17 –
IPR019798
Gene3D
G3DSA:3.90.1150.10
360 515 156 1.60E-59
IPR015422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004372
Molecular function Glycine hydroxymethyltransferase activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine.
Subterm of
GO:0019264
Biological process Glycine biosynthetic process from serine The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of
GO:0035999
Biological process Tetrahydrofolate interconversion The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules.
Subterm of

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LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj6g3v1966340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1966340.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.