Domain Predictions — View

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cd00378

Source: CDD

Description

SHMT

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004372 View details of GO:0004372 AmiGO InterPro QuickGO	Molecular function	Glycine hydroxymethyltransferase activity	Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine.	Subterm of GO:0016742
GO:0019264 View details of GO:0019264 AmiGO InterPro QuickGO	Biological process	Glycine biosynthetic process from serine	The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine.	Subterm of GO:0006545 GO:0006563
GO:0030170 View details of GO:0030170 AmiGO InterPro QuickGO	Molecular function	Pyridoxal phosphate binding	Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.	Subterm of GO:0043168 GO:0050662 GO:0070279
GO:0035999 View details of GO:0035999 AmiGO InterPro QuickGO	Biological process	Tetrahydrofolate interconversion	The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules.	Subterm of GO:0006730 GO:0046653

Associated Lotus transcripts 27

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v0173680.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Glycine max] gi\|356500779\|ref\|XP_003519208.1\|	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF12 SSF53383 SignalP-TM_GRAM_POSITIVE cd00378 mobidb-lite	17
Lj1g3v0738020.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase [Medicago truncatula] gi\|357461719\|ref\|XP_003601141.1\|	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 MF_00051 PF00464 PS00096 PTHR11680 PTHR11680:SF7 SSF53383 cd00378 mobidb-lite	15
Lj2g3v1467880.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase 5 [Glycine max] gi\|351722703\|ref\|NP_001237509.1\|	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF10 SSF53383 cd00378	15
Lj4g3v2592460.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase [Glycine max] gi\|389548688\|gb\|AFK83582.1\|	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF11 SSF53383 cd00378	15
Lj4g3v2692470.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase [Medicago truncatula] gi\|357445445\|ref\|XP_003593000.1\|	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF7 SSF53383 cd00378	14
Lj6g3v0247670.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: serine hydroxymethyltransferase 1-like [Cicer arietinum] gi\|502135169\|ref\|XP_004502243.1\|	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF11 SSF53383 cd00378	15
Lj6g3v1966340.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase 4 [Glycine max] gi\|351724373\|ref\|NP_001238335.1\|	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 SSF53383 cd00378	14
LotjaGi1g1v0134500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp\|P34899\|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr\|A0A0R4J2Q8\|A0A0R4J2Q8_SOYBN Serine hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0134500	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF37 SSF53383 SignalP-TM cd00378	17
LotjaGi1g1v0134500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp\|P34899\|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr\|A0A0R4J2Q8\|A0A0R4J2Q8_SOYBN Serine hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0134500	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF37 SSF53383 SignalP-TM cd00378	17
LotjaGi1g1v0249100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT1G36370.1 serine hydroxymethyltransferase 7; Swiss-Prot: sp\|Q84WV0\|GLYC7_ARATH Serine hydroxymethyltransferase 7; TrEMBL-Plants: tr\|G7J467\|G7J467_MEDTR Serine hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0249100	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PS00096 PTHR11680 PTHR11680:SF39 SSF53383 cd00378 mobidb-lite	16
LotjaGi2g1v0330200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp\|P34899\|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr\|I3SY17\|I3SY17_LOTJA Serine hydroxymethyltransferase; Found in the gene: LotjaGi2g1v0330200	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF40 SSF53383 cd00378	16
LotjaGi2g1v0330200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp\|P34899\|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr\|I3SY17\|I3SY17_LOTJA Serine hydroxymethyltransferase; Found in the gene: LotjaGi2g1v0330200	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF40 SSF53383 cd00378	16
LotjaGi2g1v0330200.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp\|P34899\|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr\|I3SY17\|I3SY17_LOTJA Serine hydroxymethyltransferase; Found in the gene: LotjaGi2g1v0330200	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF40 SSF53383 cd00378	15
LotjaGi2g1v0330200.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp\|P34899\|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr\|I3SY17\|I3SY17_LOTJA Serine hydroxymethyltransferase; Found in the gene: LotjaGi2g1v0330200	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF40 SSF53383 cd00378	16
LotjaGi2g1v0330200.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp\|P34899\|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr\|I3SY17\|I3SY17_LOTJA Serine hydroxymethyltransferase; Found in the gene: LotjaGi2g1v0330200	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF40 SSF53383 cd00378	15
LotjaGi2g1v0330200.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp\|P34899\|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr\|I3SY17\|I3SY17_LOTJA Serine hydroxymethyltransferase; Found in the gene: LotjaGi2g1v0330200	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF40 SSF53383 cd00378	15
LotjaGi4g1v0371600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G13930.1 serine hydroxymethyltransferase 4; Swiss-Prot: sp\|O23254\|GLYC4_ARATH Serine hydroxymethyltransferase 4; TrEMBL-Plants: tr\|A0A1B1RUN9\|A0A1B1RUN9_GLYSO Serine hydroxymethyltransferase; Found in the gene: LotjaGi4g1v0371600	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF33 SSF53383 cd00378	16
LotjaGi4g1v0371600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G13930.1 serine hydroxymethyltransferase 4; Swiss-Prot: sp\|O23254\|GLYC4_ARATH Serine hydroxymethyltransferase 4; TrEMBL-Plants: tr\|A0A1B1RUN9\|A0A1B1RUN9_GLYSO Serine hydroxymethyltransferase; Found in the gene: LotjaGi4g1v0371600	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF33 SSF53383 cd00378	16
LotjaGi4g1v0371600.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G13930.1 serine hydroxymethyltransferase 4; Swiss-Prot: sp\|O23254\|GLYC4_ARATH Serine hydroxymethyltransferase 4; TrEMBL-Plants: tr\|A0A1B1RUN9\|A0A1B1RUN9_GLYSO Serine hydroxymethyltransferase; Found in the gene: LotjaGi4g1v0371600	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF33 SSF53383 cd00378	16
LotjaGi6g1v0040700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G13930.1 serine hydroxymethyltransferase 4; Swiss-Prot: sp\|O23254\|GLYC4_ARATH Serine hydroxymethyltransferase 4; TrEMBL-Plants: tr\|G7JAR7\|G7JAR7_MEDTR Serine hydroxymethyltransferase; Found in the gene: LotjaGi6g1v0040700	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF33 SSF53383 cd00378	16
LotjaGi6g1v0040700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G13930.1 serine hydroxymethyltransferase 4; Swiss-Prot: sp\|O23254\|GLYC4_ARATH Serine hydroxymethyltransferase 4; TrEMBL-Plants: tr\|G7JAR7\|G7JAR7_MEDTR Serine hydroxymethyltransferase; Found in the gene: LotjaGi6g1v0040700	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF33 SSF53383 cd00378	16
LotjaGi6g1v0040700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G13930.1 serine hydroxymethyltransferase 4; Swiss-Prot: sp\|O23254\|GLYC4_ARATH Serine hydroxymethyltransferase 4; TrEMBL-Plants: tr\|I3SEQ9\|I3SEQ9_MEDTR Serine hydroxymethyltransferase; Found in the gene: LotjaGi6g1v0040700	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF33 SSF53383 cd00378	15
LotjaGi6g1v0314300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G32520.1 serine hydroxymethyltransferase 3; Swiss-Prot: sp\|Q94JQ3\|GLYP3_ARATH Serine hydroxymethyltransferase 3, chloroplastic; TrEMBL-Plants: tr\|V7BSE7\|V7BSE7_PHAVU Serine hydroxymethyltransferase; Found in the gene: LotjaGi6g1v0314300	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF34 SSF53383 cd00378	16
LotjaGi6g1v0314300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT4G32520.1 serine hydroxymethyltransferase 3; Swiss-Prot: sp\|Q94JQ3\|GLYP3_ARATH Serine hydroxymethyltransferase 3, chloroplastic; TrEMBL-Plants: tr\|A0A0R0H289\|A0A0R0H289_SOYBN Serine hydroxymethyltransferase; Found in the gene: LotjaGi6g1v0314300	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PIRSF000412 PS00096 PTHR11680 PTHR11680:SF34 SSF53383 cd00378	16
LotjaGi6g1v0361500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT1G22020.1 serine hydroxymethyltransferase 6; Swiss-Prot: sp\|Q9LM59\|GLYC6_ARATH Serine hydroxymethyltransferase 6; TrEMBL-Plants: tr\|G7IPE1\|G7IPE1_MEDTR Serine hydroxymethyltransferase; Found in the gene: LotjaGi6g1v0361500	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PS00096 PTHR11680 PTHR11680:SF39 SSF53383 cd00378 mobidb-lite	16
LotjaGi6g1v0361500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT1G22020.1 serine hydroxymethyltransferase 6; Swiss-Prot: sp\|Q9LM59\|GLYC6_ARATH Serine hydroxymethyltransferase 6; TrEMBL-Plants: tr\|G7IPE1\|G7IPE1_MEDTR Serine hydroxymethyltransferase; Found in the gene: LotjaGi6g1v0361500	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PS00096 PTHR11680 PTHR11680:SF39 SSF53383 cd00378	15
LotjaGi6g1v0361500.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine hydroxymethyltransferase; TAIR: AT1G22020.1 serine hydroxymethyltransferase 6; Swiss-Prot: sp\|Q9LM59\|GLYC6_ARATH Serine hydroxymethyltransferase 6; TrEMBL-Plants: tr\|A0A0R0IP64\|A0A0R0IP64_SOYBN Serine hydroxymethyltransferase; Found in the gene: LotjaGi6g1v0361500	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR001085 IPR015421 IPR015422 IPR015424 IPR019798 IPR039429 MF_00051 PF00464 PS00096 PTHR11680 PTHR11680:SF39 SSF53383 cd00378 mobidb-lite	16

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	3.70