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Lj6g3v1968120.1

Overview

Field Value
Gene ID Lj6g3v1968120
Transcript ID Lj6g3v1968120.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description RING/FYVE/PHD-type zinc finger family protein isoform 1 [Theobroma cacao] gi|508780652|gb|EOY27908.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
50 88 39 – –
PANTHER
PTHR15629
72 537 466 0 –
PANTHER
PTHR15629:SF9
72 537 466 0 –
Gene3D
G3DSA:3.30.40.10
220 291 72 1.20E-18
IPR013083
SMART
SM00064
220 291 72 4.30E-16
IPR000306
SUPERFAMILY
SSF57903
223 302 80 1.20E-18
IPR011011
Pfam
PF01363
224 289 66 2.40E-16
IPR000306
ProSiteProfiles
PS50178
228 290 63 12.544
IPR017455
CDD
cd11526
331 532 202 5.66E-98 –
Pfam
PF04366
406 530 125 4.10E-35
IPR007461

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj6g3v1968120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1968120.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.