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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017455
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We have found 59 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.017s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0274529.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Cucumis sativus] gi|449522972|ref|XP_004168499.1| chr0 142326271 142331215 +
2 domain predictions
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Lj0g3v0311279.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357443735|ref|XP_003592145.1| chr0 162522956 162531762 -
2 domain predictions
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Lj0g3v0311279.2
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr0 162522956 162536081 -
2 domain predictions
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Lj1g3v2195300.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357466985|ref|XP_003603777.1| chr1 26326216 26330797 +
2 domain predictions
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Lj1g3v2195300.2
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357466985|ref|XP_003603777.1| chr1 26326216 26331648 +
2 domain predictions
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Lj1g3v2443940.1
n.a. Chromosome condensation regulator-like protein [Medicago truncatula] gi|357506539|ref|XP_003623558.1| chr1 28515625 28516676 -
2 domain predictions
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Lj2g3v3055310.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357493985|ref|XP_003617281.1| chr2 39274464 39280024 +
2 domain predictions
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Lj3g3v1403990.1
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
2 domain predictions
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Lj3g3v1403990.2
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
2 domain predictions
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Lj3g3v1403990.3
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
2 domain predictions
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Lj3g3v2575590.1
n.a. PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like [Cicer arietinum] gi|502156622|ref|XP_004510566.1| chr3 31265369 31276094 -
2 domain predictions
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Lj4g3v0423120.1
n.a. phosphoinositide binding protein [Arabidopsis thaliana] gi|79368222|ref|NP_176362.3| chr4 5651548 5654934 +
2 domain predictions
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Lj4g3v2215300.1
n.a. RING/FYVE/PHD-type zinc finger family protein [Theobroma cacao] gi|508782892|gb|EOY30148.1| chr4 30640621 30644431 +
2 domain predictions
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Lj4g3v2215310.1
n.a. PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase-like [Glycine max] gi|356547984|ref|XP_003542384.1| chr4 30646688 30657932 +
2 domain predictions
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Lj4g3v2215570.1
n.a. PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate-like isoform X1 [Cicer arietinum] gi|502150650|ref|XP_004508057.1| chr4 30793368 30798230 -
2 domain predictions
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Lj5g3v1959100.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr5 27717103 27724815 -
2 domain predictions
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Lj6g3v0028840.1
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357439465|ref|XP_003590009.1| chr6 476798 483158 +
2 domain predictions
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Lj6g3v0391170.1
n.a. RCC1 and BTB domain-containing protein [Medicago truncatula] gi|357460713|ref|XP_003600638.1| chr6 3588296 3593342 +
2 domain predictions
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Lj6g3v1160740.1
n.a. RING/FYVE/PHD-type zinc finger family protein [Theobroma cacao] gi|508782892|gb|EOY30148.1| chr6 14089221 14092182 -
2 domain predictions
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Lj6g3v1968120.1
n.a. RING/FYVE/PHD-type zinc finger family protein isoform 1 [Theobroma cacao] gi|508780652|gb|EOY27908.1| chr6 22803664 22807165 +
2 domain predictions
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LotjaGi1g1v0049200.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1M739|I1M739_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6825463 6835374 -
2 domain predictions
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LotjaGi1g1v0049200.2
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833767 -
2 domain predictions
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LotjaGi1g1v0049200.3
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833780 -
2 domain predictions
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LotjaGi1g1v0049200.4
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|G7K368|G7K368_MEDTR Regulator of chromosome condensation (RCC1) family protein; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833926 -
2 domain predictions
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LotjaGi1g1v0049200.5
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833987 -
2 domain predictions
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LotjaGi1g1v0430400.1
n.a. Zinc finger FYVE domain-containing protein 1; TAIR: AT1G20110.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9ASS2|FREE1_ARATH Protein FREE1; TrEMBL-Plants: tr|G7J5A0|G7J5A0_MEDTR RING/FYVE/PHD-type zinc finger protein; Found in the gene: LotjaGi1g1v0430400 LjG1.1_chr1 92535891 92542169 +
2 domain predictions
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LotjaGi1g1v0452300.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT4G14368.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|G7KX16|G7KX16_MEDTR Regulator of chromosome condensation (RCC1) family protein; Found in the gene: LotjaGi1g1v0452300 LjG1.1_chr1 95218471 95226158 -
2 domain predictions
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LotjaGi2g1v0134600.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|A0A0S3TAW6|A0A0S3TAW6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48800529 48812331 -
2 domain predictions
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LotjaGi2g1v0134600.2
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1JDG4|I1JDG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48801389 48810020 -
2 domain predictions
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LotjaGi2g1v0134600.3
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1JDG4|I1JDG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48802245 48810028 -
2 domain predictions
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LotjaGi2g1v0134600.4
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|K7K743|K7K743_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48802439 48810020 -
2 domain predictions
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LotjaGi3g1v0203100.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT4G14368.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|A0A1J7FNN1|A0A1J7FNN1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0203100 LjG1.1_chr3 29640742 29647427 -
2 domain predictions
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LotjaGi3g1v0203100.2
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT4G14368.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|A0A1J7FNN1|A0A1J7FNN1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0203100 LjG1.1_chr3 29641091 29646009 -
2 domain predictions
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LotjaGi3g1v0203100.3
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT4G14368.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|A0A1J7FNN1|A0A1J7FNN1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0203100 LjG1.1_chr3 29641162 29646009 -
2 domain predictions
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LotjaGi3g1v0408200.1
n.a. 1-phosphatidylinositol-3-phosphate 5-kinase; TAIR: AT3G14270.1 phosphatidylinositol-4-phosphate 5-kinase family protein; Swiss-Prot: sp|Q9LUM0|FAB1B_ARATH 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B; TrEMBL-Plants: tr|A0A0B2NWD6|A0A0B2NWD6_GLYSO 1-phosphatidylinositol-3-phosphate 5-kinase FAB1; Found in the gene: LotjaGi3g1v0408200 LjG1.1_chr3 81156327 81167287 -
2 domain predictions
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LotjaGi4g1v0046000.2
n.a. FYVE zinc finger protein; TAIR: AT1G61690.1 phosphoinositide binding protein; Swiss-Prot: sp|Q960X8|HRS_DROME Hepatocyte growth factor-regulated tyrosine kinase substrate; TrEMBL-Plants: tr|A0A0R0JB68|A0A0R0JB68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0046000 LjG1.1_chr4 5393504 5400800 +
2 domain predictions
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LotjaGi4g1v0046000.3
n.a. FYVE zinc finger protein; TAIR: AT1G61690.1 phosphoinositide binding protein; Swiss-Prot: sp|Q960X8|HRS_DROME Hepatocyte growth factor-regulated tyrosine kinase substrate; TrEMBL-Plants: tr|A0A0R0JB68|A0A0R0JB68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0046000 LjG1.1_chr4 5393637 5400736 +
2 domain predictions
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LotjaGi4g1v0185000.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT1G69710.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|K7L9S7|K7L9S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0185000 LjG1.1_chr4 40595021 40625396 -
2 domain predictions
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LotjaGi4g1v0318000.1
n.a. Ankyrin repeat domain-containing protein; TAIR: AT2G26210.1 Ankyrin repeat family protein; Swiss-Prot: sp|P40343|VPS27_YEAST Vacuolar protein sorting-associated protein 27; TrEMBL-Plants: tr|I3SWL3|I3SWL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0318000 LjG1.1_chr4 69554627 69559782 +
2 domain predictions
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LotjaGi4g1v0319600.1
n.a. 1-phosphatidylinositol-3-phosphate 5-kinase; TAIR: AT3G14270.1 phosphatidylinositol-4-phosphate 5-kinase family protein; Swiss-Prot: sp|Q9LUM0|FAB1B_ARATH 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B; TrEMBL-Plants: tr|A0A0B2Q844|A0A0B2Q844_GLYSO 1-phosphatidylinositol-3-phosphate 5-kinase FAB1; Found in the gene: LotjaGi4g1v0319600 LjG1.1_chr4 69713858 69732276 -
2 domain predictions
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LotjaGi4g1v0319600.2
n.a. 1-phosphatidylinositol-3-phosphate 5-kinase; TAIR: AT3G14270.1 phosphatidylinositol-4-phosphate 5-kinase family protein; Swiss-Prot: sp|Q9LUM0|FAB1B_ARATH 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B; TrEMBL-Plants: tr|A0A0B2Q844|A0A0B2Q844_GLYSO 1-phosphatidylinositol-3-phosphate 5-kinase FAB1; Found in the gene: LotjaGi4g1v0319600 LjG1.1_chr4 69720170 69732111 -
2 domain predictions
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LotjaGi4g1v0319700.1
n.a. SH3 domain-containing protein; TAIR: AT3G43230.1 RING/FYVE/PHD-type zinc finger family protein; Swiss-Prot: sp|Q9URW6|YIE2_SCHPO SH3 domain-containing protein PJ696.02; TrEMBL-Plants: tr|I1MS36|I1MS36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0319700 LjG1.1_chr4 69733907 69738263 -
2 domain predictions
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LotjaGi4g1v0319700.2
n.a. SH3 domain-containing protein; TAIR: AT3G43230.1 RING/FYVE/PHD-type zinc finger family protein; Swiss-Prot: sp|Q9URW6|YIE2_SCHPO SH3 domain-containing protein PJ696.02; TrEMBL-Plants: tr|I1MS36|I1MS36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0319700 LjG1.1_chr4 69734764 69737537 -
2 domain predictions
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LotjaGi5g1v0293400.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|V7BF38|V7BF38_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0293400 LjG1.1_chr5 61088752 61096822 -
2 domain predictions
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LotjaGi5g1v0293400.2
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q17TI5|BRX_ARATH Protein BREVIS RADIX; TrEMBL-Plants: tr|V7BF38|V7BF38_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0293400 LjG1.1_chr5 61089537 61092420 -
2 domain predictions
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LotjaGi5g1v0293400.3
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|V7BF38|V7BF38_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0293400 LjG1.1_chr5 61089537 61095152 -
2 domain predictions
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LotjaGi6g1v0005200.5
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT4G14368.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|G7I4N4|G7I4N4_MEDTR Chromosome condensation regulator RCC1 repeat protein; Found in the gene: LotjaGi6g1v0005200 LjG1.1_chr6 1030511 1037347 +
2 domain predictions
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LotjaGi6g1v0052200.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT1G65920.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2; TrEMBL-Plants: tr|A0A0S3S5P3|A0A0S3S5P3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0052200 LjG1.1_chr6 9323506 9332186 +
2 domain predictions
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LotjaGi6g1v0052200.2
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT1G65920.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|K7MPW4|K7MPW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0052200 LjG1.1_chr6 9325255 9332197 +
2 domain predictions
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LotjaGi6g1v0181100.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1N146|I1N146_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181100 LjG1.1_chr6 47304519 47316040 +
2 domain predictions
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