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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1984430 |
| Transcript ID | Lj6g3v1984430.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cellulose synthase A catalytic subunit 8 [UDP]-forming] gi|356515180|ref|XP_003526279.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 175 | 175 | – | – | |
| SUPERFAMILY | 2 | 62 | 61 | 9.89E-23 | – | |
| Gene3D | 2 | 65 | 64 | 2.40E-17 | ||
| Pfam | 6 | 60 | 55 | 2.20E-15 | ||
| PANTHER | 7 | 563 | 557 | 0 | – | |
| PANTHER | 7 | 563 | 557 | 0 | – | |
| MobiDBLite | 115 | 142 | 28 | – | – | |
| Phobius | 176 | 195 | 20 | – | – | |
| Phobius | 196 | 200 | 5 | – | – | |
| Phobius | 201 | 222 | 22 | – | – | |
| Phobius | 223 | 711 | 489 | – | – | |
| Pfam | 256 | 966 | 711 | 0 | ||
| SUPERFAMILY | 270 | 324 | 55 | 3.37E-09 | ||
| SUPERFAMILY | 424 | 545 | 122 | 3.37E-09 | ||
| PANTHER | 596 | 958 | 363 | 0 | – | |
| PANTHER | 596 | 958 | 363 | 0 | – | |
| SUPERFAMILY | 651 | 775 | 125 | 3.37E-09 | ||
| Phobius | 712 | 732 | 21 | – | – | |
| Phobius | 733 | 751 | 19 | – | – | |
| TMHMM | 750 | 772 | 23 | – | – | |
| Phobius | 752 | 772 | 21 | – | – | |
| Phobius | 773 | 783 | 11 | – | – | |
| Phobius | 784 | 802 | 19 | – | – | |
| TMHMM | 784 | 806 | 23 | – | – | |
| Phobius | 803 | 821 | 19 | – | – | |
| TMHMM | 821 | 843 | 23 | – | – | |
| Phobius | 822 | 842 | 21 | – | – | |
| Phobius | 843 | 862 | 20 | – | – | |
| TMHMM | 863 | 885 | 23 | – | – | |
| Phobius | 863 | 884 | 22 | – | – | |
| Phobius | 885 | 903 | 19 | – | – | |
| TMHMM | 900 | 922 | 23 | – | – | |
| Phobius | 904 | 922 | 19 | – | – | |
| Phobius | 923 | 933 | 11 | – | – | |
| Phobius | 934 | 954 | 21 | – | – | |
| TMHMM | 935 | 952 | 18 | – | – | |
| Phobius | 955 | 975 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of Lj6g3v1984430.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1984430.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.