Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR027934
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 39 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.870s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj6g3v0937020.1
LjAstray bZIP with a Ring-finger motif [Lotus japonicus] gi|23496517|dbj|BAC20318.1| chr6 10518286 10524467 -
2 domain predictions
 –
Lj0g3v0245539.1
n.a. PREDICTED: cellulose synthase A catalytic subunit 3 [UDP]-forming] gi|356530659|ref|XP_003533898.1| chr0 127312759 127321229 -
2 domain predictions
 –
Lj0g3v0245539.2
n.a. PREDICTED: cellulose synthase A catalytic subunit 3 [UDP]-forming] gi|356530659|ref|XP_003533898.1| chr0 127312759 127321229 -
2 domain predictions
 –
Lj0g3v0249089.1
n.a. PREDICTED: cellulose synthase A catalytic subunit 1 [UDP]-forming] gi|502132343|ref|XP_004501313.1| chr0 129108274 129114705 -
2 domain predictions
 –
Lj0g3v0305289.1
n.a. cellulose synthase A [Leucaena leucocephala] gi|243010644|gb|ACS94418.1| chr0 159132361 159134759 +
2 domain predictions
 –
Lj0g3v0337689.1
n.a. PREDICTED: cellulose synthase A catalytic subunit 1 [UDP]-forming] gi|502132343|ref|XP_004501313.1| chr0 176842836 176848985 +
2 domain predictions
 –
Lj2g3v1255060.1
n.a. PREDICTED: cellulose synthase A catalytic subunit 6 [UDP]-forming] gi|356525568|ref|XP_003531396.1| chr2 20070048 20078001 -
2 domain predictions
 –
Lj3g3v0807680.1
n.a. PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP]-forming] gi|502127241|ref|XP_004499618.1| chr3 9748389 9761757 +
2 domain predictions
 –
Lj3g3v0807680.2
n.a. PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP]-forming] gi|502127241|ref|XP_004499618.1| chr3 9748389 9761533 +
2 domain predictions
 –
Lj3g3v0838370.1
n.a. PREDICTED: cellulose synthase A catalytic subunit 3 [UDP]-forming] gi|356530659|ref|XP_003533898.1| chr3 10573441 10578431 -
2 domain predictions
 –
Lj4g3v2775550.1
n.a. PREDICTED: cellulose synthase A catalytic subunit 6 [UDP]-forming] gi|356525568|ref|XP_003531396.1| chr4 37165176 37172198 +
2 domain predictions
 –
Lj6g3v0937030.1
n.a. n.a. chr6 10518543 10524062 -
2 domain predictions
 –
Lj6g3v1077270.2
n.a. PREDICTED: cellulose synthase A catalytic subunit 7 [UDP]-forming] gi|356517040|ref|XP_003527198.1| chr6 12501511 12507447 -
2 domain predictions
 –
Lj6g3v1392560.1
n.a. Cellulose synthase [Medicago truncatula] gi|357449211|ref|XP_003594882.1| chr6 16642486 16648175 +
2 domain predictions
 –
Lj6g3v1412740.1
n.a. Cellulose synthase [Medicago truncatula] gi|357449211|ref|XP_003594882.1| chr6 16733497 16737805 -
2 domain predictions
 –
Lj6g3v1984430.1
n.a. PREDICTED: cellulose synthase A catalytic subunit 8 [UDP]-forming] gi|356515180|ref|XP_003526279.1| chr6 22964518 22971338 +
2 domain predictions
 –
LotjaGi1g1v0314700.1
n.a. Cellulose synthase; TAIR: AT5G64740.1 cellulose synthase 6; Swiss-Prot: sp|Q94JQ6|CESA6_ARATH Cellulose synthase A catalytic subunit 6 [UDP]-forming]; TrEMBL-Plants: tr|V7CR17|V7CR17_PHAVU Cellulose synthase; Found in the gene: LotjaGi1g1v0314700 LjG1.1_chr1 76005229 76013337 -
2 domain predictions
 –
LotjaGi1g1v0385400.1
n.a. Cellulose synthase; TAIR: AT4G32410.1 cellulose synthase 1; Swiss-Prot: sp|O48946|CESA1_ARATH Cellulose synthase A catalytic subunit 1 [UDP]-forming]; TrEMBL-Plants: tr|A0A151TT19|A0A151TT19_CAJCA Cellulose synthase; Found in the gene: LotjaGi1g1v0385400 LjG1.1_chr1 86907335 86914152 -
2 domain predictions
 –
LotjaGi3g1v0061000.1
n.a. Cellulose synthase; TAIR: AT5G05170.1 Cellulose synthase family protein; Swiss-Prot: sp|Q941L0|CESA3_ARATH Cellulose synthase A catalytic subunit 3 [UDP]-forming]; TrEMBL-Plants: tr|A0A0S3S8T1|A0A0S3S8T1_PHAAN Cellulose synthase; Found in the gene: LotjaGi3g1v0061000 LjG1.1_chr3 6458675 6466416 -
2 domain predictions
 –
LotjaGi3g1v0061000.2
n.a. Cellulose synthase; TAIR: AT5G05170.1 Cellulose synthase family protein; Swiss-Prot: sp|Q941L0|CESA3_ARATH Cellulose synthase A catalytic subunit 3 [UDP]-forming]; TrEMBL-Plants: tr|A0A0S3S8T1|A0A0S3S8T1_PHAAN Cellulose synthase; Found in the gene: LotjaGi3g1v0061000 LjG1.1_chr3 6459056 6465338 -
2 domain predictions
 –
LotjaGi3g1v0061000.3
n.a. Cellulose synthase; TAIR: AT5G05170.1 Cellulose synthase family protein; Swiss-Prot: sp|Q941L0|CESA3_ARATH Cellulose synthase A catalytic subunit 3 [UDP]-forming]; TrEMBL-Plants: tr|A0A0S3S8T1|A0A0S3S8T1_PHAAN Cellulose synthase; Found in the gene: LotjaGi3g1v0061000 LjG1.1_chr3 6459056 6465338 -
2 domain predictions
 –
LotjaGi3g1v0061000.5
n.a. Cellulose synthase; TAIR: AT5G05170.1 Cellulose synthase family protein; Swiss-Prot: sp|Q941L0|CESA3_ARATH Cellulose synthase A catalytic subunit 3 [UDP]-forming]; TrEMBL-Plants: tr|A0A0S3S8T1|A0A0S3S8T1_PHAAN Cellulose synthase; Found in the gene: LotjaGi3g1v0061000 LjG1.1_chr3 6459056 6465440 -
2 domain predictions
 –
LotjaGi3g1v0099900.1
n.a. Cellulose synthase; TAIR: AT2G21770.1 cellulose synthase A9; Swiss-Prot: sp|Q69V23|CESA3_ORYSJ Probable cellulose synthase A catalytic subunit 3 [UDP]-forming]; TrEMBL-Plants: tr|A0A151SXB6|A0A151SXB6_CAJCA Cellulose synthase; Found in the gene: LotjaGi3g1v0099900 LjG1.1_chr3 12420664 12434125 -
2 domain predictions
 –
LotjaGi3g1v0122500.1
n.a. Cellulose synthase; TAIR: AT5G05170.1 Cellulose synthase family protein; Swiss-Prot: sp|Q941L0|CESA3_ARATH Cellulose synthase A catalytic subunit 3 [UDP]-forming]; TrEMBL-Plants: tr|A0A1J7I388|A0A1J7I388_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0122500 LjG1.1_chr3 14984592 14993982 +
2 domain predictions
 –
LotjaGi3g1v0122500.2
n.a. Cellulose synthase; TAIR: AT5G05170.1 Cellulose synthase family protein; Swiss-Prot: sp|Q941L0|CESA3_ARATH Cellulose synthase A catalytic subunit 3 [UDP]-forming]; TrEMBL-Plants: tr|A0A1J7I388|A0A1J7I388_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0122500 LjG1.1_chr3 14985400 14992831 +
2 domain predictions
 –
LotjaGi3g1v0122500.3
n.a. Cellulose synthase; TAIR: AT5G05170.1 Cellulose synthase family protein; Swiss-Prot: sp|Q941L0|CESA3_ARATH Cellulose synthase A catalytic subunit 3 [UDP]-forming]; TrEMBL-Plants: tr|A0A1J7I388|A0A1J7I388_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0122500 LjG1.1_chr3 14985534 14992831 +
2 domain predictions
 –
LotjaGi3g1v0122500.5
n.a. Cellulose synthase; TAIR: AT5G05170.1 Cellulose synthase family protein; Swiss-Prot: sp|Q941L0|CESA3_ARATH Cellulose synthase A catalytic subunit 3 [UDP]-forming]; TrEMBL-Plants: tr|A0A1J7I388|A0A1J7I388_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0122500 LjG1.1_chr3 14985628 14992831 +
2 domain predictions
 –
LotjaGi4g1v0379000.1
n.a. Cellulose synthase; TAIR: AT4G18780.1 cellulose synthase family protein; Swiss-Prot: sp|Q8LPK5|CESA8_ARATH Cellulose synthase A catalytic subunit 8 [UDP]-forming]; TrEMBL-Plants: tr|A0A151R8T4|A0A151R8T4_CAJCA Cellulose synthase; Found in the gene: LotjaGi4g1v0379000 LjG1.1_chr4 75831827 75838402 -
2 domain predictions
 –
LotjaGi4g1v0406300.1
n.a. Cellulose synthase; TAIR: AT5G64740.1 cellulose synthase 6; Swiss-Prot: sp|Q94JQ6|CESA6_ARATH Cellulose synthase A catalytic subunit 6 [UDP]-forming]; TrEMBL-Plants: tr|V7CR17|V7CR17_PHAVU Cellulose synthase; Found in the gene: LotjaGi4g1v0406300 LjG1.1_chr4 78247775 78255522 -
2 domain predictions
 –
LotjaGi5g1v0289500.1
n.a. Cellulose synthase; TAIR: AT5G64740.1 cellulose synthase 6; Swiss-Prot: sp|Q94JQ6|CESA6_ARATH Cellulose synthase A catalytic subunit 6 [UDP]-forming]; TrEMBL-Plants: tr|A0A0L9TZ92|A0A0L9TZ92_PHAAN Cellulose synthase; Found in the gene: LotjaGi5g1v0289500 LjG1.1_chr5 60632198 60638597 -
2 domain predictions
 –
LotjaGi5g1v0289500.3
n.a. Cellulose synthase; TAIR: AT5G64740.1 cellulose synthase 6; Swiss-Prot: sp|Q94JQ6|CESA6_ARATH Cellulose synthase A catalytic subunit 6 [UDP]-forming]; TrEMBL-Plants: tr|A0A0L9TZ92|A0A0L9TZ92_PHAAN Cellulose synthase; Found in the gene: LotjaGi5g1v0289500 LjG1.1_chr5 60632954 60638162 -
2 domain predictions
 –
LotjaGi6g1v0183200.1
n.a. Cellulose synthase; TAIR: AT4G32410.1 cellulose synthase 1; Swiss-Prot: sp|O48946|CESA1_ARATH Cellulose synthase A catalytic subunit 1 [UDP]-forming]; TrEMBL-Plants: tr|Q8GRY7|Q8GRY7_LOTJA BZIP with a Ring-finger motif; Found in the gene: LotjaGi6g1v0183200 LjG1.1_chr6 47600371 47606853 +
2 domain predictions
 –
LotjaGi6g1v0201500.1
n.a. Cellulose synthase; TAIR: AT5G17420.1 Cellulose synthase family protein; Swiss-Prot: sp|Q9SWW6|CESA7_ARATH Cellulose synthase A catalytic subunit 7 [UDP]-forming]; TrEMBL-Plants: tr|A0A1J7HDL1|A0A1J7HDL1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0201500 LjG1.1_chr6 49883461 49888815 -
2 domain predictions
 –
LotjaGi6g1v0201500.2
n.a. Cellulose synthase; TAIR: AT5G17420.1 Cellulose synthase family protein; Swiss-Prot: sp|Q9SWW6|CESA7_ARATH Cellulose synthase A catalytic subunit 7 [UDP]-forming]; TrEMBL-Plants: tr|G7LFG6|G7LFG6_MEDTR Cellulose synthase; Found in the gene: LotjaGi6g1v0201500 LjG1.1_chr6 49883724 49888693 -
2 domain predictions
 –
LotjaGi6g1v0201500.3
n.a. Cellulose synthase; TAIR: AT5G17420.1 Cellulose synthase family protein; Swiss-Prot: sp|Q9SWW6|CESA7_ARATH Cellulose synthase A catalytic subunit 7 [UDP]-forming]; TrEMBL-Plants: tr|A0A1J7HDL1|A0A1J7HDL1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0201500 LjG1.1_chr6 49883724 49888693 -
2 domain predictions
 –
LotjaGi6g1v0201500.4
n.a. Cellulose synthase; TAIR: AT5G17420.1 Cellulose synthase family protein; Swiss-Prot: sp|Q9SWW6|CESA7_ARATH Cellulose synthase A catalytic subunit 7 [UDP]-forming]; TrEMBL-Plants: tr|G7LFG6|G7LFG6_MEDTR Cellulose synthase; Found in the gene: LotjaGi6g1v0201500 LjG1.1_chr6 49883724 49888693 -
2 domain predictions
 –
LotjaGi6g1v0244300.1
n.a. Cellulose synthase; TAIR: AT5G44030.1 cellulose synthase A4; Swiss-Prot: sp|Q84JA6|CESA4_ARATH Cellulose synthase A catalytic subunit 4 [UDP]-forming]; TrEMBL-Plants: tr|A0A1J7FVN2|A0A1J7FVN2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0244300 LjG1.1_chr6 55695052 55701179 -
2 domain predictions
 –
LotjaGi6g1v0244300.4
n.a. Cellulose synthase; TAIR: AT5G44030.1 cellulose synthase A4; Swiss-Prot: sp|Q84JA6|CESA4_ARATH Cellulose synthase A catalytic subunit 4 [UDP]-forming]; TrEMBL-Plants: tr|G7INF0|G7INF0_MEDTR Cellulose synthase; Found in the gene: LotjaGi6g1v0244300 LjG1.1_chr6 55695829 55700835 -
2 domain predictions
 –
LotjaGi6g1v0320400.1
n.a. Cellulose synthase; TAIR: AT4G18780.1 cellulose synthase family protein; Swiss-Prot: sp|Q8LPK5|CESA8_ARATH Cellulose synthase A catalytic subunit 8 [UDP]-forming]; TrEMBL-Plants: tr|I1K8R3|I1K8R3_SOYBN Cellulose synthase; Found in the gene: LotjaGi6g1v0320400 LjG1.1_chr6 63695878 63702605 +
2 domain predictions
 –