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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2006120 |
| Transcript ID | Lj6g3v2006120.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: glutamate receptor 2.7-like [Glycine max] gi|356546603|ref|XP_003541714.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 726 | 726 | 0 | – | |
| Phobius | 1 | 521 | 521 | – | – | |
| PANTHER | 1 | 726 | 726 | 0 | – | |
| SUPERFAMILY | 2 | 350 | 349 | 5.42E-46 | ||
| CDD | 2 | 359 | 358 | 4.44E-68 | – | |
| Gene3D | 2 | 106 | 105 | 1.30E-16 | – | |
| Pfam | 5 | 340 | 336 | 2.10E-42 | ||
| Gene3D | 107 | 261 | 155 | 4.20E-13 | – | |
| Gene3D | 262 | 326 | 65 | 1.30E-16 | – | |
| SUPERFAMILY | 380 | 524 | 145 | 8.25E-31 | – | |
| SUPERFAMILY | 382 | 395 | 14 | 5.42E-46 | ||
| Gene3D | 403 | 495 | 93 | 2.90E-19 | – | |
| SMART | 403 | 726 | 324 | 1.20E-06 | ||
| Pfam | 421 | 724 | 304 | 2.00E-11 | ||
| Gene3D | 510 | 642 | 133 | 4.40E-24 | – | |
| TMHMM | 518 | 540 | 23 | – | – | |
| Pfam | 519 | 614 | 96 | 4.60E-23 | ||
| Phobius | 522 | 540 | 19 | – | – | |
| Phobius | 541 | 551 | 11 | – | – | |
| Phobius | 552 | 571 | 20 | – | – | |
| Phobius | 572 | 582 | 11 | – | – | |
| Phobius | 583 | 601 | 19 | – | – | |
| TMHMM | 584 | 606 | 23 | – | – | |
| Phobius | 602 | 726 | 125 | – | – | |
| SUPERFAMILY | 627 | 725 | 99 | 8.25E-31 | – | |
| Gene3D | 697 | 725 | 29 | 2.90E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ligand-gated ion channel activity | Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of Lj6g3v2006120.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2006120.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.