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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2006660 |
| Transcript ID | Lj6g3v2006660.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g46100-like [Glycine max] gi|356549285|ref|XP_003543024.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 471 | 469 | 1.20E-262 | – | |
| PANTHER | 3 | 471 | 469 | 1.20E-262 | – | |
| ProSiteProfiles | 49 | 83 | 35 | 9.01 | ||
| TIGRFAM | 52 | 84 | 33 | 3.50E-04 | ||
| Pfam | 52 | 81 | 30 | 0.0047 | ||
| ProSiteProfiles | 84 | 118 | 35 | 6.665 | ||
| ProSiteProfiles | 119 | 153 | 35 | 10.095 | ||
| TIGRFAM | 122 | 154 | 33 | 9.70E-06 | ||
| Pfam | 122 | 151 | 30 | 0.01 | ||
| Gene3D | 123 | 323 | 201 | 2.10E-04 | ||
| SUPERFAMILY | 126 | 259 | 134 | 1.86E-05 | – | |
| Pfam | 153 | 203 | 51 | 7.20E-18 | ||
| ProSiteProfiles | 154 | 189 | 36 | 12.244 | ||
| TIGRFAM | 156 | 191 | 36 | 7.60E-09 | ||
| ProSiteProfiles | 190 | 224 | 35 | 14.82 | ||
| TIGRFAM | 192 | 226 | 35 | 5.00E-12 | ||
| Pfam | 224 | 273 | 50 | 1.80E-21 | ||
| ProSiteProfiles | 225 | 259 | 35 | 13.581 | ||
| TIGRFAM | 227 | 261 | 35 | 1.70E-10 | ||
| ProSiteProfiles | 260 | 294 | 35 | 11.235 | ||
| TIGRFAM | 262 | 295 | 34 | 4.90E-06 | ||
| Pfam | 294 | 323 | 30 | 8.80E-13 | ||
| ProSiteProfiles | 295 | 329 | 35 | 13.954 | ||
| TIGRFAM | 297 | 331 | 35 | 3.20E-11 | ||
| ProSiteProfiles | 330 | 364 | 35 | 9.361 | ||
| TIGRFAM | 334 | 365 | 32 | 0.0021 | ||
| ProSiteProfiles | 372 | 406 | 35 | 7.914 | ||
| Pfam | 403 | 434 | 32 | 1.60E-07 | ||
| ProSiteProfiles | 407 | 441 | 35 | 12.342 | ||
| TIGRFAM | 410 | 442 | 33 | 1.30E-10 | ||
| ProSiteProfiles | 442 | 477 | 36 | 6.16 | ||
| Coils | 460 | 479 | 20 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v2006660.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2006660.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.