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Lj6g3v2006720.1

Overview

Field Value
Gene ID Lj6g3v2006720
Transcript ID Lj6g3v2006720.1
Lotus japonicus genome version MG20 v3.0
Description DnaJ homolog subfamily B member [Medicago truncatula] gi|357446733|ref|XP_003593642.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.287.110
1 59 59 1.80E-20
IPR001623
PANTHER
PTHR24078:SF309
1 53 53 8.50E-209 –
SMART
SM00271
1 34 34 0.0011
IPR001623
SUPERFAMILY
SSF46565
1 45 45 2.49E-16
IPR001623
ProSiteProfiles
PS50076
1 42 42 15.565
IPR001623
Pfam
PF00226
1 39 39 2.00E-14
IPR001623
CDD
cd06257
1 31 31 5.00E-10
IPR001623
PANTHER
PTHR24078
1 53 53 8.50E-209 –
PRINTS
PR00625
14 34 21 6.60E-12
IPR001623
ProSitePatterns
PS00636
19 38 20 –
IPR018253
PRINTS
PR00625
34 53 20 6.60E-12
IPR001623
MobiDBLite
mobidb-lite
41 72 32 – –
SUPERFAMILY
SSF46565
72 103 32 2.49E-16
IPR001623
PANTHER
PTHR24078:SF309
73 313 241 8.50E-209 –
PANTHER
PTHR24078
73 313 241 8.50E-209 –
SUPERFAMILY
SSF49493
133 224 92 2.49E-16
IPR008971
Gene3D
G3DSA:2.60.260.20
138 217 80 5.00E-33 –
CDD
cd10747
139 300 162 9.50E-47 –
Pfam
PF01556
139 297 159 1.20E-40
IPR002939
Gene3D
G3DSA:2.60.260.20
218 297 80 6.40E-24 –
SUPERFAMILY
SSF49493
220 306 87 6.02E-21
IPR008971

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj6g3v2006720.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2006720.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.