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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2043190 |
| Transcript ID | Lj6g3v2043190.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: sphingolipid delta(4)-desaturase DES1-like [Cicer arietinum] gi|502077808|ref|XP_004485750.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 51 | 51 | – | – | |
| PANTHER | 6 | 323 | 318 | 1.20E-215 | – | |
| PIRSF | 7 | 327 | 321 | 3.10E-151 | ||
| SMART | 14 | 52 | 39 | 9.00E-20 | ||
| Pfam | 17 | 50 | 34 | 1.10E-19 | ||
| CDD | 35 | 322 | 288 | 3.49E-169 | – | |
| Phobius | 52 | 70 | 19 | – | – | |
| Phobius | 71 | 75 | 5 | – | – | |
| TMHMM | 73 | 95 | 23 | – | – | |
| Pfam | 74 | 297 | 224 | 2.40E-23 | ||
| Phobius | 76 | 98 | 23 | – | – | |
| Phobius | 99 | 109 | 11 | – | – | |
| Phobius | 110 | 131 | 22 | – | – | |
| TMHMM | 110 | 132 | 23 | – | – | |
| Phobius | 132 | 158 | 27 | – | – | |
| TMHMM | 159 | 181 | 23 | – | – | |
| Phobius | 159 | 179 | 21 | – | – | |
| Phobius | 180 | 190 | 11 | – | – | |
| Phobius | 191 | 211 | 21 | – | – | |
| TMHMM | 191 | 213 | 23 | – | – | |
| Phobius | 212 | 216 | 5 | – | – | |
| Phobius | 217 | 237 | 21 | – | – | |
| Phobius | 238 | 327 | 90 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Sphingolipid biosynthetic process | The chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). | ||
| Molecular function | Sphingolipid delta-4 desaturase activity | Catalysis of the introduction of a trans double bond between C4 and C5 of the long chain base region of a sphingolipid. Sphingolipids are composed of a long chain base (LCB) amide-linked to a very long chain fatty acid. |
Expression pattern of Lj6g3v2043190.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2043190.1, powered by CORGI.
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