Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v2080270.1

Overview

Field Value
Gene ID Lj6g3v2080270
Transcript ID Lj6g3v2080270.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pre-mRNA-splicing factor SYF1-like [Cicer arietinum] gi|502077677|ref|XP_004485713.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11246
12 202 191 5.40E-251 –
PANTHER
PTHR11246:SF5
12 202 191 5.40E-251 –
SUPERFAMILY
SSF48452
18 69 52 8.67E-08
IPR011990
SMART
SM00386
41 73 33 6.6
IPR003107
SUPERFAMILY
SSF48452
83 492 410 5.15E-27
IPR011990
SMART
SM00386
83 115 33 17
IPR003107
SMART
SM00386
117 151 35 28
IPR003107
Gene3D
G3DSA:1.25.40.10
160 171 12 5.60E-18
IPR011990
PANTHER
PTHR11246:SF5
233 320 88 5.40E-251 –
PANTHER
PTHR11246
233 320 88 5.40E-251 –
Gene3D
G3DSA:1.25.40.10
248 276 29 5.60E-18
IPR011990
SMART
SM00386
264 299 36 10
IPR003107
Coils
Coil
311 331 21 – –
PANTHER
PTHR11246:SF5
347 625 279 5.40E-251 –
PANTHER
PTHR11246
347 625 279 5.40E-251 –
Gene3D
G3DSA:1.25.40.10
381 619 239 5.60E-18
IPR011990
SMART
SM00386
440 476 37 1.3
IPR003107
SUPERFAMILY
SSF48452
510 619 110 3.03E-11
IPR011990
SMART
SM00386
532 564 33 0.5
IPR003107
SMART
SM00386
566 600 35 11
IPR003107
Coils
Coil
604 624 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj6g3v2080270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2080270.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.